PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG409300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 421aa    MW: 42819.2 Da    PI: 10.1747
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG409300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001897117323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          Cp Cgk F+++     H+++H
  Pavir.5NG409300.1.p  97 CPFCGKEFRNHKAVCGHMKVH 117
                          *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.003495117IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.74395122IPR007087Zinc finger, C2H2
SuperFamilySSF576673.07E-796117No hitNo description
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576673.07E-7279306No hitNo description
SMARTSM003552.1284306IPR015880Zinc finger, C2H2-like
PfamPF139120.079284303IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058284311IPR007087Zinc finger, C2H2
PROSITE patternPS000280286306IPR007087Zinc finger, C2H2
SuperFamilySSF576675.31E-5329360No hitNo description
PfamPF139123.2E-6331356IPR007087Zinc finger, C2H2
SMARTSM003550.15332354IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203332359IPR007087Zinc finger, C2H2
PROSITE patternPS000280334354IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAGSSEDPCR TRRRRLADLY GGGGGPEEGE IVTGYHSDAD NAGYYNSNRG CSSDSDETIS  60
DSVPARYGSA ASTCPAVANS SHVGGRAASS AAAALACPFC GKEFRNHKAV CGHMKVHREQ  120
GIGKASKVIE RSAPVVGAWG GTAKRGGSGS RARASSPIPE PVGQSMAVVV AEAKIVLDPM  180
PLAFATPNLP PVPAATAAPG PSPVPVAPVV ASDSAASSSE PSTRGDATET VAARAASPPK  240
EKETVVDLHA APPPAPPAAG VQALHVRRQR VAPPPRGRQD PNGYTCGKCN KWFRTHQGLG  300
GHTVGHKNRE LAAALQGGAA PRGRNAKAER THACKVCGAE FPGGIQLGGH MRKHWKGAPF  360
NKKPRRVIQP LAHVGSPAPR PAMEGRVLLF GIDIGAGVKT PAAQGGSSAP EASASIGGDK  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG409300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3HTA90.0A0A2S3HTA9_9POAL; Uncharacterized protein
STRINGPavir.Eb01749.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-13C2H2 family protein