PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG378700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 321aa    MW: 33556.2 Da    PI: 9.3284
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG378700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.17.4e-28144202259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK+ kg+++pr+YYrCt a +Cpv+kkv+r+a+d +v+++tY g Hnh+
  Pavir.5NG378700.1.p 144 NDWCQWRKYGQKVSKGNPCPRAYYRCTGApDCPVRKKVQRCARDMSVLVTTYDGAHNHP 202
                          899************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-28131202IPR003657WRKY domain
SuperFamilySSF1182903.4E-24137203IPR003657WRKY domain
PROSITE profilePS5081125.476138204IPR003657WRKY domain
SMARTSM007742.8E-31143203IPR003657WRKY domain
PfamPF031065.8E-23144202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MELKTLVFKE LMVRGADKMN LADEPAGPFL RLSLGPTNAI GASCRATGGD IVDAKLRLHA  60
GDDEAIAAAG LALGLRCDSS EPPARAVVSA GTKRQRAASD DDQRSTSGGN KQKALMLPAA  120
PPRQERPPAD RVSFRARCSA ATVNDWCQWR KYGQKVSKGN PCPRAYYRCT GAPDCPVRKK  180
VQRCARDMSV LVTTYDGAHN HPLTPYAAAM ASAMLASAAA STSAQADATG TATTARAHDT  240
PLLVRPVAVL PPRRYPSSGG APAAATSSQN VVPVANIMQE AVADPKFRAA VMAAVASYVG  300
EQCGGRTIDD LLTLAPNRCD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-191432051475WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG378700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818819.11e-165probable WRKY transcription factor 47 isoform X2
TrEMBLA0A2T8ILB71e-164A0A2T8ILB7_9POAL; Uncharacterized protein
STRINGPavir.Eb02399.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-38WRKY DNA-binding protein 9