PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5NG361600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HSF

Protein Properties

Length: 390aa MW: 42555 Da PI: 6.1942

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5NG361600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	103.1	2.4e-32	82	175	2	102
HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F+ k+ye++ d++++ ++sw gnsfvv+d++ +a +Lp++Fkh nfaSF+RQLn+YgF+kv+ ++ weF+h+sF g Pavir.5NG361600.1.p 82 FVAKTYEMVADAATDAVVSWApgGAGNSFVVWDPRALAVGILPRFFKHANFASFIRQLNIYGFRKVNPDR---------WEFAHESFLSG 162 9******************55556*************************************999.........******* PP XXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkks 102 +k+ll++ikr++ Pavir.5NG361600.1.p 163 QKHLLRNIKRRRA 175 ********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	6.5E-51	78	173	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.49E-30	79	173	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.0E-34	79	173	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.1E-17	82	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.4E-28	82	173	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.1E-17	122	134	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	123	147	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.1E-17	135	147	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MASSSSSSPL ARRPSCSGGS EPGTTRASGG GLGIGLGGEA MARAAAAVKR EPKPEPLAAE 60 PESGPAVVLP RPVEGPPMPA PFVAKTYEMV ADAATDAVVS WAPGGAGNSF VVWDPRALAV 120 GILPRFFKHA NFASFIRQLN IYGFRKVNPD RWEFAHESFL SGQKHLLRNI KRRRAPKPQM 180 EAQPASGASV CFGQPNDSSE VERLKRDRAA LKAEVLTLKQ QYISCKSQLI ALEERILNNE 240 RNQQHAIAFF AKVLSNPAFV RQFLLNYAVN KKLCSTAKRQ RLMENEEQHV DTPLKNGKEP 300 ALATDANASA ASSDGGAVPK HEPMAEWNYQ EMDNIWEDVW DDLDAIPGAE MDQEDKAAAR 360 FDVEEFTGRP CGWVDDGPYL VEQMQFVEH*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MASSSSSSPL ARRPSCSGGS EPGTTRASGG GLGIGLGGEA MARAAAAVKR EPKPEPLAAE  60
PESGPAVVLP RPVEGPPMPA PFVAKTYEMV ADAATDAVVS WAPGGAGNSF VVWDPRALAV  120
GILPRFFKHA NFASFIRQLN IYGFRKVNPD RWEFAHESFL SGQKHLLRNI KRRRAPKPQM  180
EAQPASGASV CFGQPNDSSE VERLKRDRAA LKAEVLTLKQ QYISCKSQLI ALEERILNNE  240
RNQQHAIAFF AKVLSNPAFV RQFLLNYAVN KKLCSTAKRQ RLMENEEQHV DTPLKNGKEP  300
ALATDANASA ASSDGGAVPK HEPMAEWNYQ EMDNIWEDVW DDLDAIPGAE MDQEDKAAAR  360
FDVEEFTGRP CGWVDDGPYL VEQMQFVEH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	4e-24	75	173	13	120	Heat shock factor protein 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.36144	2e-91	callus

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5NG361600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814071.1	0.0	heat stress transcription factor A-6a-like
Swissprot	Q657C0	1e-152	HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBL	A0A2T7DKP3	0.0	A0A2T7DKP3_9POAL; Uncharacterized protein
STRING	Pavir.Eb02487.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	2e-73	heat shock transcription factor A2

Link Out ? help Back to Top
Phytozome	Pavir.5NG361600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]