PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG361500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 683aa MW: 73382.9 Da PI: 5.2259 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.7 | 2e-08 | 475 | 496 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++ +G C +GdrCkF+H+ Pavir.5NG361500.1.p 475 ECHNYKNNGMCIRGDRCKFSHV 496 6********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.981 | 416 | 443 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-5 | 416 | 441 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0038 | 417 | 442 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.971 | 445 | 472 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.9E-4 | 445 | 471 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.2E-5 | 446 | 470 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.023 | 473 | 497 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-5 | 475 | 496 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.53 | 475 | 498 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-4 | 476 | 495 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MEDALAASPV VPPPAPLAAA AVLTRRRSHL DSASYRTLSR LFSHRLHLQP SSRVGTAPIE 60 GEPAVANPTG GHSGDSAQVP EGADFDWLKD VEKEVADAGG PSLHETVSLA REQLATANPT 120 GDPCEAEAPQ HSHDDVDEVV AVESTCGNTG AVIEELKIGA GTLVVEDDAL KLVKACLETT 180 EVDESVDGAL GNDDGQLLLD AMMTNFTGLI DDVGAGVIPV QTCVVSGGEL QNSKASEDLK 240 QSGGGIEDGE PVSNLDRELN EDGGFEEGEI DGEFQDLDSE ESGDSELVDD DNAEDEKLGG 300 DSVSRGSGAC DHGIQSVNLH PKPEIVGNGH LTLNKDANFR GDEQISVTRA QAVSYDEVVD 360 WNETPLPGNE ATNPGKKRKR SLTEERKAKK TENKRKKRAK QRIADGVKRP KLQHVTKPKK 420 PCHFYDHGKC QQGSKCKFSH DFTPSTKSKP CKHFACGSCL KGDDCPYDHE LSKYECHNYK 480 NNGMCIRGDR CKFSHVMRTT EGTPTQDAKP SDASLAYEKT NRREHTSSQK TSTVHSGEPV 540 TSASTKQQCS ILKNLSGFSI NSQNVSNRIP KGVQFLPFGK SGSNSSSPHL DALSIEKPRN 600 ANATQHQYIG GHEAEKQKNA KKNDQESLLD EKNSSKEATM LPFSDLKKAS LPINSAATSV 660 HTQPEISEAS RIFQEFLFGA GS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 375 | 380 | KKRKRS |
2 | 377 | 397 | RKRSLTEERKAKKTENKRKKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.8809 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG361500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX469993 | 0.0 | JX469993.1 Zea mays subsp. mays clone UT3353 C3H-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817940.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_025817941.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_025817942.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Swissprot | Q657B3 | 0.0 | C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7 | ||||
TrEMBL | A0A2T7DKP6 | 0.0 | A0A2T7DKP6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb02489.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8838 | 37 | 43 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG361500.1.p |
Publications ? help Back to Top | |||
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