PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG337100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | BES1 | ||||||||
Protein Properties | Length: 355aa MW: 37397.2 Da PI: 7.5755 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 207.9 | 2.8e-64 | 12 | 160 | 2 | 148 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasas 89 g++r ptw+ErEnn++RERrRRaiaaki+aGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ e+++ +g+sas s Pavir.5NG337100.1.p 12 GGTRVPTWRERENNRHRERRRRAIAAKIFAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPTaaERHDPIGRSASPS 101 789************************************************************************9999*********** PP DUF822 90 pesslqsslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvss 148 p+ss+q +sp++sy++sp+sssfps+ s+++i+l + +sl+p+l++ls++ss Pavir.5NG337100.1.p 102 PCSSYQ--------PSPRASYNPSPASSSFPSSGSSSHITLGGNnfiggvegSSLIPWLKNLSSSSS 160 ******........9************************9998899*****9*********998655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.8E-69 | 12 | 156 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MTNGAGGGGG LGGTRVPTWR ERENNRHRER RRRAIAAKIF AGLRAYGNYN LPKHCDNNEV 60 LKALCNEAGW TVEPDGTTYR KGCKPTAAER HDPIGRSASP SPCSSYQPSP RASYNPSPAS 120 SSFPSSGSSS HITLGGNNFI GGVEGSSLIP WLKNLSSSSS IASSSKFPQL HHLYFNGGSI 180 SAPVTPPSSS PTRTPRIKTD WENPSIQPPW AGSNYASLPN SQPPSPGHQV APDPTWLAGF 240 QISSAGPSSP TYSLVAPNPF GIFKENIAST SRMCTPGESG TCSPVMGGVP IHHDVTMVDG 300 APDDFAFGSS SNGNNESPGL VKAWEGERIH EECASDEHEL ELTLGSSKTR ADPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 3e-24 | 15 | 89 | 372 | 446 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 3e-24 | 15 | 89 | 372 | 446 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 3e-24 | 15 | 89 | 372 | 446 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 3e-24 | 15 | 89 | 372 | 446 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7464 | 0.0 | callus| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May function in brassinosteroid signaling. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG337100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813584.1 | 0.0 | protein BZR1 homolog 3 | ||||
Swissprot | Q5Z9E5 | 0.0 | BZR3_ORYSJ; Protein BZR1 homolog 3 | ||||
TrEMBL | A0A1E5VA88 | 0.0 | A0A1E5VA88_9POAL; Protein BZR1-like protein 3 | ||||
STRING | Pavir.J12085.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1366 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 7e-62 | BES1/BZR1 homolog 4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG337100.1.p |
Publications ? help Back to Top | |||
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