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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.5NG322500.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
bHLH |
| Protein Properties |
Length: 234aa MW: 25411 Da PI: 8.804 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.5NG322500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 31.7 | 2.8e-10 | 71 | 118 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++ rE+ RRdr+N++f+eL +l + + +K +K++iL A + +++L
Pavir.5NG322500.1.p 71 TKACREKLRRDRLNERFNELCAILEPG---KPPKADKVAILSDAARLLSQL 118
5678**********************9...99***************9999 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MSCGGQAGGW LLDYGLVEEE IQGSEFIYMV DDPAVSSVIL GFDAPRKEDG VQDNTAAKKR 60
SRPESSAPPG TKACREKLRR DRLNERFNEL CAILEPGKPP KADKVAILSD AARLLSQLRA 120
EAQKLKQSNE SLQDSIKSLK AEKSKLRDEK TRLKAEKERL EQMLKGVSAA AAPAPFVPHP 180
AAAAAPSFHP AAFVQAGKFV PYPTYPPPAA FWQWIPPTSL DTSKDPAHWP PVA*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT036372 | 0.0 | BT036372.1 Zea mays full-length cDNA clone ZM_BFb0110A15 mRNA, complete cds. |
| GenBank | BT040271 | 0.0 | BT040271.1 Zea mays full-length cDNA clone ZM_BFc0075C03 mRNA, complete cds. |
| GenBank | BT041388 | 0.0 | BT041388.1 Zea mays full-length cDNA clone ZM_BFc0115M23 mRNA, complete cds. |
| GenBank | BT087616 | 0.0 | BT087616.1 Zea mays full-length cDNA clone ZM_BFb0133E06 mRNA, complete cds. |
| GenBank | KJ726890 | 0.0 | KJ726890.1 Zea mays clone pUT3433 bHLH transcription factor (bHLH118) mRNA, partial cds. |
| Publications
? help Back to Top |
- Li X,Zhang H,Ai Q,Liang G,Yu D
Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
Plant Physiol., 2016. 170(4): p. 2478-93
[PMID:26921305] - Aparicio F,Pallás V
The coat protein of Alfalfa mosaic virus interacts and interferes with the transcriptional activity of the bHLH transcription factor ILR3 promoting salicylic acid-dependent defence signalling response.
Mol. Plant Pathol., 2017. 18(2): p. 173-186
[PMID:26929142] - Liang G,Zhang H,Li X,Ai Q,Yu D
bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
J. Exp. Bot., 2017. 68(7): p. 1743-1755
[PMID:28369511] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Li B, et al.
Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
Plant Cell, 2018. 30(1): p. 178-195
[PMID:29317470] - Min JH, et al.
Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
Front Plant Sci, 2017. 8: p. 2100
[PMID:29321786] - Samira R, et al.
The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis.
Plant Mol. Biol., 2018. 97(4-5): p. 297-309
[PMID:29882068]
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