PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG224600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 262aa MW: 27739.9 Da PI: 8.4078 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0015 | 108 | 130 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Pavir.5NG224600.1.p 108 YECKTCNKCFPSFQALGGHRTSH 130 99*********999998888777 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.0004 | 168 | 190 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F + L H+r+H Pavir.5NG224600.1.p 168 HECSACGTTFASGQALGGHMRRH 190 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.38E-8 | 108 | 130 | No hit | No description |
PROSITE profile | PS50157 | 11.635 | 108 | 135 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 108 | 130 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.0E-10 | 108 | 131 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.38E-8 | 163 | 190 | No hit | No description |
Pfam | PF13912 | 1.8E-10 | 167 | 191 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.91 | 168 | 190 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.051 | 168 | 190 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 170 | 190 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MLEEEDGTGQ LLIVSGGGGG GGRLKHRTNK RPRHWSSSLP SPASSSSSRS GSTTTQQEED 60 EEADVAKCLI LLAQGPAVAV EPQPPIVMPA PETPRSTSRM YAGVSSSYEC KTCNKCFPSF 120 QALGGHRTSH SNDRKKQQPR RPEQEAAAAA VTTTLSLRTA ATGRPVAHEC SACGTTFASG 180 QALGGHMRRH RPLTMSAAAP ESVVTADDSS NSNGRRLLLL QERSAGGNHH VNLELDLNLL 240 PAPSTEQEVT SPAKRMHHHL N* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG224600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811584.1 | 1e-131 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A3L6RWY2 | 1e-129 | A0A3L6RWY2_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J04850.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 6e-26 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG224600.1.p |