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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.5NG140200.3.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 387aa MW: 41460 Da PI: 8.6469 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5NG140200.3.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 14.4 | 6.9e-05 | 275 | 313 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq
Pavir.5NG140200.3.p 275 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 313
7788899*********998.....8******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MRMTPFKNLL VSSERNCAGH HYHSDELEVL LSAQGHNHSH HAASPLLPHQ LSSLLMMQDL 60 GFQWSNCSFA DTSSVPMNGQ QDGHRKIKEE EPLISSRSSC AGTAAISYHD VDVDGGCLPA 120 MAAADLDGTV LPSVNISRPQ QQLMKAWPAA PPPLPGDAFE ILASSRLCKT LLLSQASSVL 180 LHNGMPLLRS EHVPCGPPAH PQGPSGDNYK LQMGAAPLAN GGGRHWSAEH DAAPACQKAV 240 RPAVVPPQSQ SQAPSLKKPR VESRSSTVVP SFKVRKEKLG DRIAALQQLV SPFGKTDTAS 300 VLMEAIGYIK FLQGQVETLS GPYLKSSRNK KPSRTTQRGA SNANGGELEE TRLNLRSRGL 360 CLVPLSCTSY VTNENGVWAP PNFRGN*
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