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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.5NG077000.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 246aa MW: 26731.7 Da PI: 4.8165 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5NG077000.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 47.4 | 4.6e-15 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l ++ +G tW+++a+ g++R++k+c++rw +yl
Pavir.5NG077000.1.p 25 KGLWSPEEDERLFIQITYHGVSTWSSVAQLAGLRRSGKSCRLRWMNYL 72
678*******************************************97 PP
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2 | Myb_DNA-binding | 44.7 | 3.2e-14 | 80 | 121 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+ ++ E+e+++ + + G++ W+tIa+tm+ gRt++++k++w++
Pavir.5NG077000.1.p 80 PISKREEEIIISLQQSIGNR-WSTIAATMP-GRTDNEIKNYWNS 121
56889***************.*********.***********95 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MVRKPSHGDT TSAGNGGTEA MKERKGLWSP EEDERLFIQI TYHGVSTWSS VAQLAGLRRS 60 GKSCRLRWMN YLRPDLKKEP ISKREEEIII SLQQSIGNRW STIAATMPGR TDNEIKNYWN 120 SRIRKRLNAA AKAGRDDGAS TKPAPASEEK LEVEATNNAD TEAGPVPIPE RFPVFACQLI 180 DGGIAGGGGS GENTPSTTSS TQQNSGEESE ASVGDSNMIH FISFDDLDYP ADLLMDLPGA 240 MDAWE*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU971559 | 1e-145 | EU971559.1 Zea mays clone 367166 anthocyanin regulatory C1 protein mRNA, complete cds. |