PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG778800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 258aa MW: 27249.6 Da PI: 7.0868 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.7 | 3.5e-30 | 115 | 168 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Pavir.5KG778800.1.p 115 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 168 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-31 | 112 | 173 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.648 | 112 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.69E-19 | 113 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.5E-24 | 116 | 168 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.9E-8 | 118 | 167 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGEEAADDYD LELLGGADCE RVMEWETGLP GADELTPLSQ PLVPPGLAAA FRIPPEPGRT 60 LLDVQRASAA TVSRLRRASS SSSSGSFQPY FLSGAGAEGG AAAAAAEATN NSSKRPRLVW 120 TPQLHKRFVD VVAHLGIKNA VPKTIMQLMN VEGLTRENVA SHLQKYRLYV KRMQGLSNEG 180 PSASDHIFAS TPVPHSLVHE PQAQVPAPAP PMWVTVGMLT GSNSGSGAAA GYGGYGYGYG 240 YQQQQLASHH HHRAGDK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-35 | 115 | 171 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7614 | 1e-139 | callus| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG778800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 3e-95 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. | |||
GenBank | KF769444 | 3e-95 | KF769444.1 Triticum aestivum cultivar Chinese Spring LUX-B gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817497.1 | 1e-120 | transcription factor PCL1 | ||||
Swissprot | Q94DH3 | 9e-91 | PCL1_ORYSJ; Transcription factor PCL1 | ||||
TrEMBL | A0A2S3HMQ4 | 1e-119 | A0A2S3HMQ4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea04181.1.p | 1e-142 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46640.2 | 3e-50 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG778800.1.p |