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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.5KG747200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 381aa MW: 39297.2 Da PI: 4.8565 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5KG747200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 36.5 | 8.7e-12 | 195 | 237 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L
Pavir.5KG747200.1.p 195 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 237
79*********************66......****************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MDDSAPGKLD EIAGGGGAPG DWSYLTSEGM ASASFPLFPF PRDALSTPPS VASLLLSMDP 60 AALFDIHGAF PPPSSAAGGG GGSALPAFHD FTSTNPFDDA GQFLAAPPPA PAEQHQGHKG 120 GFLAPPPPAP AFGIDWDDDD EMEHSVDASS LAISASMENA AGASTGGGGG PGGGGGGGSG 180 SGRGKKKGMP AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IEYLKELLQR 240 INDLHNEIES APSSSLVGPT SASFQPSTPT LQTFPGHVKE ELCPAAFPSP NGQQATVEVR 300 MREGHAVNIH MFCARRPGIL LSTMTALDGL GLDIEQAVIS CFNGFAMDVF RAEQCGDGPG 360 LVPDEIKAVL LHTAGLQNAM *
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 164 | 178 | TGGGGGPGGGGGGGS |
2 | 184 | 202 | KKKGMPAKNLMAERRRRKK |
3 | 196 | 203 | ERRRRKKL |