PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG747200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 381aa MW: 39297.2 Da PI: 4.8565 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 8.7e-12 | 195 | 237 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L Pavir.5KG747200.1.p 195 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 237 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.764 | 188 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.23E-16 | 191 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-14 | 194 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-9 | 194 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.1E-16 | 195 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.75E-13 | 195 | 241 | No hit | No description |
CDD | cd04873 | 3.49E-5 | 309 | 350 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MDDSAPGKLD EIAGGGGAPG DWSYLTSEGM ASASFPLFPF PRDALSTPPS VASLLLSMDP 60 AALFDIHGAF PPPSSAAGGG GGSALPAFHD FTSTNPFDDA GQFLAAPPPA PAEQHQGHKG 120 GFLAPPPPAP AFGIDWDDDD EMEHSVDASS LAISASMENA AGASTGGGGG PGGGGGGGSG 180 SGRGKKKGMP AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IEYLKELLQR 240 INDLHNEIES APSSSLVGPT SASFQPSTPT LQTFPGHVKE ELCPAAFPSP NGQQATVEVR 300 MREGHAVNIH MFCARRPGIL LSTMTALDGL GLDIEQAVIS CFNGFAMDVF RAEQCGDGPG 360 LVPDEIKAVL LHTAGLQNAM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 190 | 247 | 6 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 178 | TGGGGGPGGGGGGGS |
2 | 184 | 202 | KKKGMPAKNLMAERRRRKK |
3 | 196 | 203 | ERRRRKKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.15894 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG747200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814576.1 | 0.0 | transcription factor ICE1-like | ||||
TrEMBL | A0A2S3HNF2 | 0.0 | A0A2S3HNF2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea03858.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1646 | 37 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.4 | 1e-102 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG747200.1.p |