PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG747200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 381aa    MW: 39297.2 Da    PI: 4.8565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG747200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.7e-12195237754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Pavir.5KG747200.1.p 195 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 237
                          79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-16191254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9194237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-16195251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.75E-13195241No hitNo description
CDDcd048733.49E-5309350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDDSAPGKLD EIAGGGGAPG DWSYLTSEGM ASASFPLFPF PRDALSTPPS VASLLLSMDP  60
AALFDIHGAF PPPSSAAGGG GGSALPAFHD FTSTNPFDDA GQFLAAPPPA PAEQHQGHKG  120
GFLAPPPPAP AFGIDWDDDD EMEHSVDASS LAISASMENA AGASTGGGGG PGGGGGGGSG  180
SGRGKKKGMP AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IEYLKELLQR  240
INDLHNEIES APSSSLVGPT SASFQPSTPT LQTFPGHVKE ELCPAAFPSP NGQQATVEVR  300
MREGHAVNIH MFCARRPGIL LSTMTALDGL GLDIEQAVIS CFNGFAMDVF RAEQCGDGPG  360
LVPDEIKAVL LHTAGLQNAM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14190247663Transcription factor MYC2
5gnj_B2e-14190247663Transcription factor MYC2
5gnj_E2e-14190247663Transcription factor MYC2
5gnj_F2e-14190247663Transcription factor MYC2
5gnj_G2e-14190247663Transcription factor MYC2
5gnj_I2e-14190247663Transcription factor MYC2
5gnj_M2e-14190247663Transcription factor MYC2
5gnj_N2e-14190247663Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164178TGGGGGPGGGGGGGS
2184202KKKGMPAKNLMAERRRRKK
3196203ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.158940.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG747200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814576.10.0transcription factor ICE1-like
TrEMBLA0A2S3HNF20.0A0A2S3HNF2_9POAL; Uncharacterized protein
STRINGPavir.Ea03858.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-102bHLH family protein