PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG717400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 485aa    MW: 50844.8 Da    PI: 6.3922
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG717400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09289336455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Pavir.5KG717400.1.p 289 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 336
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.30E-10283340No hitNo description
SuperFamilySSF474591.44E-16283354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256285335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16287353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6289336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MNCGPPDQLP PASAPSCFLN LNWDQSMAAA AAGDHLDPAL SSMVSSPASN STAAAAIDGL  60
ALHGISPQPQ YGGTPLSSPP KLNLSMMGQF HHYQPPQVGG AGPGGLPILE NLMPMGHLDQ  120
FLADPGFAER AARLSGFDGR PGGSDYGGAV PGQFGLPDAG PVGALKELEL GNGRDESSVS  180
DPASASAEMA LKGPSDGNAK KRKASGKGKG KDGPGSTAAK DPAKEESSGK RCKSADESNG  240
AEDNSGKGKA AQSNSENGGK KQGKDTSKPP EPPKDYIHVR ARRGEATDSH SLAERVRREK  300
ISQRMKLLQD LVPGCNKVVG KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PQLDFNNLPN  360
LLPKDIHQSC GPMQSSHFPL ETSGAPLPYL NQSHQGSPLG CSLTNGMDNQ SNMHPLDPAF  420
CRQMNSQHPF LNGVSDAASQ VGTFWQDDLQ SVVHMDIGQG QEIAATSSNS YNGSLQTVHM  480
KMEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.20420.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG717400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971039.10.0transcription factor bHLH77
TrEMBLA0A2T7DCJ50.0A0A2T7DCJ5_9POAL; Uncharacterized protein
STRINGPavir.Ea03809.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-66bHLH family protein