PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG699600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 266aa MW: 28695.1 Da PI: 7.9327 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 199 | 243 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++Er RR ri +++ +L++l+P+ +k + +++L +AveYIk+L Pavir.5KG699600.1.p 199 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDLAVEYIKEL 243 689*********************7....688***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.697 | 193 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-15 | 196 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.24E-12 | 197 | 248 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-15 | 198 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.1E-10 | 199 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-13 | 199 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
GEIRVPPQQH QSLAPPGPPH GLLRHSSSPA GLLSRLTADP HGMAPASGMG SYSQAGTDAA 60 MAHGHRQLSS QWSFSRQDLP RISEMGMIPA DIGESIVAGG GCNSSSDGAA QSSSYLSRNF 120 SVSSWDDTNS IMFSSSPNKK PKLDAADDMV TSFSNIDSQF GLSKSSLEMP GMDDYLQLQQ 180 DSVACRVRAK RGCATHPRSI AERERRTRIS KRLKKLQDLV PNMDKQTNTS DMLDLAVEYI 240 KELKGQVEKL KHDQANCFCS GNQNS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.9434 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG699600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970333 | 0.0 | EU970333.1 Zea mays clone 343433 mRNA sequence. | |||
GenBank | EU972851 | 0.0 | EU972851.1 Zea mays clone 389073 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814593.1 | 1e-174 | transcription factor bHLH128-like | ||||
TrEMBL | A0A2S3HP78 | 1e-173 | A0A2S3HP78_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J01306.1.p | 1e-178 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7071 | 37 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 7e-52 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG699600.1.p |