PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG662100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 286aa    MW: 31922.8 Da    PI: 6.6117
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG662100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81e-064768223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                          C +Cgk F+r  nL+ H+r H
  Pavir.5KG662100.1.p 47 FCLICGKGFKRDANLRMHMRGH 68
                         6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-54472No hitNo description
SMARTSM003550.0124668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5524673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-54872IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557195128IPR015880Zinc finger, C2H2-like
SMARTSM0035522133155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MPTPEPMEDH DVKESDDGEH EGENLPPGSY VVLQLEKEEI LAPHTHFCLI CGKGFKRDAN  60
LRMHMRGHGD EYKTAAALAK PTKDSGSDHA PVTRYSCPFV GCKRNKEHKK FQPLKTILCV  120
KNHYKRSHCD KSYTCSRCNT KKFSVIADLK THEKHCGRDK WLCSCGTTFS RKDKLFGHVA  180
LFQGHTPALP MDDVKVSEAS EQQQDSEPMN EISRSMGCFT CSSSDGISNL DMKMADDARG  240
YYSPLSFDPC FGALDDFTRP GFDISEDPFS FLPSGCSYVQ QNGDN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG662100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1847340.0KF184734.1 Saccharum hybrid cultivar R570 clone BAC 170F15 complete sequence.
GenBankKF1849410.0KF184941.1 Saccharum hybrid cultivar R570 clone BAC 189K21 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819567.10.0zinc finger protein STOP1 homolog
SwissprotQ943I61e-178STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2S3HPR30.0A0A2S3HPR3_9POAL; Uncharacterized protein
STRINGPavir.J12018.1.p0.0(Panicum virgatum)
STRINGSi001053m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-127C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]