PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG654700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 391aa MW: 43590.3 Da PI: 7.4052 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.4 | 5.5e-12 | 80 | 109 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Pavir.5KG654700.2.p 80 AKTERRLAQNREAARKSRLRKKAYVQQLET 109 799*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.6E-8 | 77 | 153 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.7E-8 | 79 | 123 | No hit | No description |
PROSITE profile | PS50217 | 9.151 | 79 | 123 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-8 | 80 | 115 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.75E-7 | 81 | 124 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 84 | 99 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.6E-28 | 162 | 236 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MSQMELVSPA SPAAPRQEVM MVTTDDYSYK PGGLAAAAPS FQQQHHHQQP PPPLQLHGGG 60 DHDKRKQAGS TRKDGKLVDA KTERRLAQNR EAARKSRLRK KAYVQQLETS RIRLQQVEHD 120 LQRARSQGLF VGGCSAAGDM SSGAAMFDME YARWLDDDSK RLAELRGGLQ AHLLDGNLGL 180 IVEECLQHYD ELFQLKAVLA RADVFHLLTG GWATPAERCF FWMGGFRPSE LLKILIPQLD 240 PLTEQQLLGI CNLQQSSEQA EEALAQGLHQ LHQSLADTVA AGTLNDGAAA PDYMSLMAVA 300 LDKLASLESF YQQADNLRQQ TLHQMRRILT TRQAARCFLS IGEYYRRLRA LSNLWASRPR 360 DNFIGTENLS PTATELQVMH QQQQNQFSGF * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5839 | 1e-150 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expression in meristem/developing ligule regions. {ECO:0000269|PubMed:9490265}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG654700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF036949 | 0.0 | AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001104893.1 | 0.0 | transcription factor LG2 | ||||
Swissprot | O49067 | 0.0 | LG2_MAIZE; Transcription factor LG2 | ||||
TrEMBL | A0A2T8IJA5 | 0.0 | A0A2T8IJA5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea03760.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.2 | 1e-139 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG654700.2.p |
Publications ? help Back to Top | |||
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