PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG600700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WOX | ||||||||
Protein Properties | Length: 271aa MW: 30320.8 Da PI: 6.32 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.3 | 2e-21 | 90 | 150 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Pavir.5KG600700.1.p 90 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKEITAELshhgQISETNVYNWFQNRRARSKR 150 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101.3 | 7e-33 | 89 | 152 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq Pavir.5KG600700.1.p 89 ARQRWQPTPMQLQILENIFDQGNGTPSKQKIKEITAELSHHGQISETNVYNWFQNRRARSKRKQ 152 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-17 | 85 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.9 | 86 | 151 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-14 | 88 | 155 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-18 | 89 | 156 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.3E-19 | 90 | 150 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.78E-14 | 90 | 152 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MEWGDRAKAA AAADERAGGG EGLGGFVKVM TDEQMEVLRK QISIYATICE QLVEMHRTLT 60 EHQDSIAGMR FSNMYCDPLI IPGGHKITAR QRWQPTPMQL QILENIFDQG NGTPSKQKIK 120 EITAELSHHG QISETNVYNW FQNRRARSKR KQAAAALPNN NAESEAEVDE EALTDKKPKS 180 DRLLHDDKAM SVHNAERISG MHHFDADHDQ ISGMMYGSSE NSMRSSGNSG QMSFYENIMS 240 NSRIDHFPGK MESSRSFSHL QHGDGFDMFG * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 151 | RRARSKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.8205 | 0.0 | callus| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG600700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815130.1 | 1e-179 | WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 1e-133 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A3L6SRR9 | 1e-179 | A0A3L6SRR9_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ea03245.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3898 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 7e-59 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG600700.1.p |
Publications ? help Back to Top | |||
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