 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.5KG598200.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 553aa MW: 59564.3 Da PI: 4.8409 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.5KG598200.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l
Pavir.5KG598200.1.p 43 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 90
79******************************************9986 PP
|
2 | Myb_DNA-binding | 52.7 | 9.9e-17 | 96 | 139 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
Pavir.5KG598200.1.p 96 KGAFTPEEERLIIQLHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 139
799*******************.*********.***********96 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 553 aa
Download sequence Send
to blast |
MYRVKSESDC EMMLQDQMDS PVADDGSSGG GSPHRGSGPP LKKGPWTSAE DAILVDYVKK 60 HGEGNWNAVQ KNTGLFRCGK SCRLRWANHL RPNLKKGAFT PEEERLIIQL HAKMGNKWAR 120 MAAHLPGRTD NEIKNYWNTR IKRCQRAGLP IYPASVCNQS SSEDQQISGD FNCGENISND 180 LLSGNSLYLP DFTSDNFIAN TEALSYAPQL SAASISNLLG QSFASKNCSF MDQVDQSGML 240 KQSGCVLPAL SDTVDGVLSS VDQFSKDSEK LKQALGFDYL NEANASSKTI APFGVTLSGS 300 HAFLNGIFSS SRPINGPLKM ELPSLQDTES DPNSWLKYTL APAMQPTELV DPYLHSPMAT 360 PSAKSESASP RNSGLLEELL HEAQALRSGK NQLPSVRSSS SSAGTPCETT TVVSPEFDLC 420 QEYWDEHHSS FLNECAPFSG YSFTESTPVS AASPDIFQLS KISPAQSPSM GSGEQAVEPK 480 HDAAGSPHPE NLRPDALFSG NTADPCSFND AIAMLLGNDM NAESKPVVGD GIVFGSSSWG 540 NMPQACEISE FK*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT033925 | 0.0 | BT033925.1 Zea mays full-length cDNA clone ZM_BFc0044D10 mRNA, complete cds. |
GenBank | BT062692 | 0.0 | BT062692.1 Zea mays full-length cDNA clone ZM_BFb0334D20 mRNA, complete cds. |
GenBank | BT063828 | 0.0 | BT063828.1 Zea mays full-length cDNA clone ZM_BFc0110K24 mRNA, complete cds. |
GenBank | HQ858750 | 0.0 | HQ858750.1 Zea mays clone UT1459 MYBGA transcription factor mRNA, partial cds. |