 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.5KG598200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 553aa MW: 59564.3 Da PI: 4.8409 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.5KG598200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l
Pavir.5KG598200.1.p 43 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 90
79******************************************9986 PP
|
| 2 | Myb_DNA-binding | 52.7 | 9.9e-17 | 96 | 139 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
Pavir.5KG598200.1.p 96 KGAFTPEEERLIIQLHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 139
799*******************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 553 aa
Download sequence Send
to blast |
MYRVKSESDC EMMLQDQMDS PVADDGSSGG GSPHRGSGPP LKKGPWTSAE DAILVDYVKK 60
HGEGNWNAVQ KNTGLFRCGK SCRLRWANHL RPNLKKGAFT PEEERLIIQL HAKMGNKWAR 120
MAAHLPGRTD NEIKNYWNTR IKRCQRAGLP IYPASVCNQS SSEDQQISGD FNCGENISND 180
LLSGNSLYLP DFTSDNFIAN TEALSYAPQL SAASISNLLG QSFASKNCSF MDQVDQSGML 240
KQSGCVLPAL SDTVDGVLSS VDQFSKDSEK LKQALGFDYL NEANASSKTI APFGVTLSGS 300
HAFLNGIFSS SRPINGPLKM ELPSLQDTES DPNSWLKYTL APAMQPTELV DPYLHSPMAT 360
PSAKSESASP RNSGLLEELL HEAQALRSGK NQLPSVRSSS SSAGTPCETT TVVSPEFDLC 420
QEYWDEHHSS FLNECAPFSG YSFTESTPVS AASPDIFQLS KISPAQSPSM GSGEQAVEPK 480
HDAAGSPHPE NLRPDALFSG NTADPCSFND AIAMLLGNDM NAESKPVVGD GIVFGSSSWG 540
NMPQACEISE FK*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT033925 | 0.0 | BT033925.1 Zea mays full-length cDNA clone ZM_BFc0044D10 mRNA, complete cds. |
| GenBank | BT062692 | 0.0 | BT062692.1 Zea mays full-length cDNA clone ZM_BFb0334D20 mRNA, complete cds. |
| GenBank | BT063828 | 0.0 | BT063828.1 Zea mays full-length cDNA clone ZM_BFc0110K24 mRNA, complete cds. |
| GenBank | HQ858750 | 0.0 | HQ858750.1 Zea mays clone UT1459 MYBGA transcription factor mRNA, partial cds. |
