PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG564200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 306aa    MW: 32454 Da    PI: 4.5144
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG564200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.82.8e-25131471128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 
                          lppGfrF Ptd+e++ +yL ++++g+++++   i e d +++ Pw L  k ++++ + +fF+  +  + +g r++r  +  g W+ +gk 
  Pavir.5KG564200.1.p  13 LPPGFRFVPTDQEVIAYYLLPRIRGQPIPF-GDILEDDPLSAPPWLLLGK-HGRRGDAFFFAAGKVMNGRGGRQERsCAGGGSWEGQGKR 100
                          79****************************.669999**********743.3445589******************778899*******9 PP

                  NAM  90 kevlsk..kgel..........vglkktLvfykgrapkgektdWvmheyrl 128
                          k  +    +              + k  L f++ ++ kg +t Wvmhey++
  Pavir.5KG564200.1.p 101 KGAKGGngE--RqrvlvggeeiEWRKYALNFHE-EEVKG-STGWVMHEYSI 147
                          888876540..23445555554888999****5.55554.9********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-324164IPR003441NAC domain
PROSITE profilePS5100529.62513163IPR003441NAC domain
PfamPF023657.3E-1914147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEASASMASK LGLPPGFRFV PTDQEVIAYY LLPRIRGQPI PFGDILEDDP LSAPPWLLLG  60
KHGRRGDAFF FAAGKVMNGR GGRQERSCAG GGSWEGQGKR KGAKGGNGER QRVLVGGEEI  120
EWRKYALNFH EEEVKGSTGW VMHEYSITAP PSLAASLQRV YRIRLSGHGR NAQKRKRGEL  180
DWGSDEEEEE EYHAAARAPT LPAVAEAGAP FAGEYPPQPE PVGTLPVAAA AVDVGNGDPA  240
GWTEDGSSGA VSSAVSSADQ DLPALVDGGD DWNFMCSLSD LLPDFDFFPG AADAGETPSE  300
MVPAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG564200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815333.11e-174NAC domain-containing protein 41-like
TrEMBLA0A2T7DG911e-174A0A2T7DG91_9POAL; Uncharacterized protein
STRINGPavir.Ea02839.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.12e-15NAC domain containing protein 41