PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG474900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 248aa MW: 26375.6 Da PI: 7.1346 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.3 | 1e-30 | 162 | 220 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh Pavir.5KG474900.1.p 162 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKDDPSYVVTMYEGVHNHV 220 59********************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.4E-32 | 149 | 221 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-27 | 155 | 221 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.664 | 157 | 222 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-34 | 162 | 221 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-24 | 163 | 219 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MALASCDSLP ADAVCFFPAM ACRHPCDGAG AGSGLAASAF YGGARSPAAA LLFSRPQLAF 60 GGAALTGLAP PRQPDAVFEC LSEEDVSSVV PGTTFGPPPP EMPVEYAGPD AASGYAHHVM 120 SVSRMSSRYV MHRGAAAMAG AEGSTRTTDR IAFRVRSEEE VLDDGYKWRK YGKKSVKNSP 180 NPRNYYRCST EGCNVKKRVE RDKDDPSYVV TMYEGVHNHV SPGTIYYATQ DVASGRFFVA 240 GMHQALD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-23 | 152 | 222 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-23 | 152 | 222 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG474900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058612 | 1e-103 | KU058612.1 UNVERIFIED: Panicum miliaceum WRKY24-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817958.1 | 1e-123 | probable WRKY transcription factor 57 | ||||
TrEMBL | A0A2S3HST6 | 1e-122 | A0A2S3HST6_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6R2X6 | 1e-121 | A0A3L6R2X6_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ea02619.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 2e-38 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG474900.1.p |