PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG407600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 419aa MW: 45493.5 Da PI: 6.3763 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43 | 5.7e-14 | 12 | 59 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie+ + r tf kRr g++K A+ LS+L++++vav++ s++ ++ + Pavir.5KG407600.1.p 12 FIEDCRGRGLTFFKRRSGLFKAASDLSTLTGVRVAVVLESENERFSSF 59 89999*************************************999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.8E-10 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.376 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-5 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.14E-14 | 6 | 71 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-14 | 8 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.3E-16 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-5 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-5 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MPRRGRRSGV SFIEDCRGRG LTFFKRRSGL FKAASDLSTL TGVRVAVVLE SENERFSSFG 60 TPDAIPIVDA FLSGGVPTEP DSSEERKANL TNLQNELFQL EKDKAVADKK QKEDMVRVKE 120 ASRTAKYAYG KEEDLDATEL YEMYRKLTWV MQEIKDCSPT LLLRDNHVEA GGRLRDPSLL 180 QPKWWRSLAS QFAPPPNYSP LSLSQASFQQ NPWSSTSHPV LARSGSSPPN PLMLQSQQHP 240 LAPHALQAPP PNEAYPYNSH IHGLDINDNN SHPFSLFPVS SSPPQPSSLQ TPPSNGSPPL 300 LLSPQLSSPP HLESLQFSFN PQNYNFMQPP HNYENASSPL IPSHQPLYNS SLGLNVDMGN 360 TGGNGEQTGG GHSKGIDLST TQQGHGGAGV MLESSSAGES PGAGNAGSNL GDFNFPCY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG407600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815415.1 | 0.0 | transcription factor RLM1-like | ||||
TrEMBL | A0A2S3HU13 | 0.0 | A0A2S3HU13_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea02149.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3089 | 22 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-11 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG407600.1.p |