PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG000100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 36856.5 Da PI: 5.0483 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.3 | 2.1e-51 | 23 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF+Ptd+e++v+yLkkk+++ ++++i++vdiyk++Pw+Lp k+ ++ ew+fFs+rd+ky++g r+nr++ sgyWkatg+dk Pavir.5KG000100.1.p 23 LPPGFRFQPTDQEIIVYYLKKKIAAAAAAVTSIIADVDIYKFDPWELPDKAVFGDGEWFFFSPRDRKYPNGARPNRTAGSGYWKATGTDK 112 79*************************999999***************77778899********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l+ + + g+kk Lvfy+gr+pkg+ktdWvmheyrl Pavir.5KG000100.1.p 113 PILAPgGAHCLGVKKALVFYQGRSPKGTKTDWVMHEYRL 151 ****9555669**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-60 | 14 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.395 | 23 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-26 | 24 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MEAAAAAGLS SSSSSLVFRG CPLPPGFRFQ PTDQEIIVYY LKKKIAAAAA AVTSIIADVD 60 IYKFDPWELP DKAVFGDGEW FFFSPRDRKY PNGARPNRTA GSGYWKATGT DKPILAPGGA 120 HCLGVKKALV FYQGRSPKGT KTDWVMHEYR LLDTDAALLL TARTRPTNSM RLDDWVLCRV 180 RNKQQGVDDP SCCYTRPADE PTTTTRDAAA ALVLPPPPPP VVGPLVLPPA AYDGDWNSDG 240 QLLHYLIATG AGSPPHPQDQ DDDPSAASAA VAAGDSSAPP PHAALVTVLE SIKRNLSFQA 300 IDELYLLQPS SKRANCMVRA ADEEQTTSSF SISAEADDEV FF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-66 | 23 | 184 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-66 | 23 | 184 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-66 | 23 | 184 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-66 | 23 | 184 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-66 | 23 | 184 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-66 | 23 | 184 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-66 | 23 | 184 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-66 | 23 | 184 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-66 | 23 | 184 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-66 | 23 | 184 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-66 | 23 | 184 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-66 | 23 | 184 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-66 | 23 | 184 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-66 | 23 | 184 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG000100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067914 | 3e-83 | BT067914.2 Zea mays full-length cDNA clone ZM_BFc0188L19 mRNA, complete cds. | |||
GenBank | EU971399 | 3e-83 | EU971399.1 Zea mays clone 363807 NAC domain transcription factor mRNA, complete cds. | |||
GenBank | KP297932 | 3e-83 | KP297932.1 Zea mays Zma1158 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815776.1 | 1e-157 | NAC transcription factor 32-like | ||||
TrEMBL | A0A3L6QZ61 | 1e-158 | A0A3L6QZ61_PANMI; NAC domain-containing protein 72-like | ||||
STRING | Pavir.Ea00010.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13797 | 19 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-54 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG000100.1.p |