 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.4NG304800.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
NAC |
Protein Properties |
Length: 411aa MW: 45129.8 Da PI: 9.5076 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.4NG304800.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 161.2 | 4e-50 | 13 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........lelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78
lppGfrFhP+d+elv +yL+kk+ g+ ++ ++ +vd++k+ePwdLp + + kewyf+s rd+kyatg+r+nrat
Pavir.4NG304800.1.p 13 LPPGFRFHPRDDELVLDYLAKKLGGDGgggggsvvVS--IygcpTMVDVDLNKCEPWDLPDIACIGGKEWYFYSLRDRKYATGQRTNRAT 100
79**********************9998888876622..13443699*************6555689*********************** PP
NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+sgyWkatgkd+++ + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r+
Pavir.4NG304800.1.p 101 DSGYWKATGKDRPISR-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRM 149
**************99.999****************************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 411 aa
Download sequence Send
to blast |
MAMNSLSMVE ARLPPGFRFH PRDDELVLDY LAKKLGGDGG GGGGSVVVSI YGCPTMVDVD 60 LNKCEPWDLP DIACIGGKEW YFYSLRDRKY ATGQRTNRAT DSGYWKATGK DRPISRKGLL 120 VGMRKTLVFY QGRAPKGKKT EWVMHEFRME GQGDPMKLPF KEDWVLCRVF YKSRATVAKP 180 PTESSSYNID AATTSLPPLI DNYNISFDQS GSVQNLEGYE QVPCFSNNPS QPSSSMNAPL 240 PSSAMADHQE QHMGKSIKDV LMSQFSRGGQ FGLRAQFGLP GDNLADEVLR RLRAHSLARC 300 RCVCVLWHAL VDGRGLLLPH ALPPRAFPGF FATARVKPWR SVHPCFLPHA GLAGSSARQA 360 RLPARAPPAR HQCNGLVLCF QDAPGAAGFL PHQARGPEPS LASTRLRPCL *
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced by auxin. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT065512 | 0.0 | BT065512.1 Zea mays full-length cDNA clone ZM_BFb0202I06 mRNA, complete cds. |
Publications
? help Back to Top |
- Le Hénanff G, et al.
Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] - Huo X,Wang C,Teng Y,Liu X
Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] - Chen X, et al.
Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] - Liu C,Wang B,Li Z,Peng Z,Zhang J
TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]
|