PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG256600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 560aa MW: 60542.9 Da PI: 6.463 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81.6 | 8.6e-26 | 54 | 107 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++r+ W+ +LH +Fvea++++ G+++A+Pk+ile+m+v+gL++e+v+SHLQkYR+ Pavir.4NG256600.1.p 54 RQRITWSGQLHCKFVEAINKI-GIDRAVPKKILEVMNVDGLSRENVASHLQKYRI 107 58*******************.********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.81E-18 | 51 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.4E-26 | 52 | 112 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.4E-23 | 55 | 107 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MEQVRNIWTH VVKKNRSDPR NNISDGNTSN HYKKNKKDEG CAEEDIIETS TQKRQRITWS 60 GQLHCKFVEA INKIGIDRAV PKKILEVMNV DGLSRENVAS HLQKYRIYLR KLSEGTLSHS 120 NPFVDEPQAW ISDQTHAHMS APESFEHHPE LVQPSPFSVG PFNSSNARMS YPSTSGTHNL 180 QQDLIQVGNG VNLPKDVVPV PLPVPVQDVG RFIYSGRPYA TSSSDSLSSS SEFFTSGPSS 240 SSSTNISNGV VFSTSRPFPS GTFGSSFASI SNEYSPSATS IILRGKISEA NRGIPFDAGF 300 FEEIANGDMP ASSSHLPLQH AELANQPSFR IQSSSAGQFN QVAPSSHLPL YSPELANQPL 360 IQIQTSSVDL SNQVDRESHQ FSELYNPINS SRVSVPTRFP DIGHSARMPI SSSHGNHVRI 420 NQLATSVASS GYVPTFESQY QNQMSGLLGR TTQTLGFSEQ VTPFNIGSSA MPIGSSGLGS 480 SSSVGPTLAN LRIGNSITPT QMPSGGAAIG NLPGGGTVDQ QSFCDQVNNS NVLPKRTSEV 540 QDGEIDDVSV FFADWVNQQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-21 | 50 | 113 | 1 | 64 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG256600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6PDP7 | 0.0 | A0A3L6PDP7_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Db00644.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22814 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-28 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG256600.1.p |