PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG255400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 284aa MW: 29161.5 Da PI: 10.4298

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG255400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.3	1.4e-07	189	230	22	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 22 qRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +RKk+++ e ++ v +L+ eN+aL++e++ l+ + +l +e+ Pavir.4NG255400.1.p 189 ARKKMRLPEIQQLVRSLSVENDALREEMKALQRACTALSKEN 230 5*************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.5E-4	190	227	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MTAVDAEPYA VVATAADIIC SLRGADLAGW TPPWRKGARA PDFPSACDGA ADGGRQEEQV 60 GGNDAQGLAW PAVSRGKRSR SRRAGSPSAS GSASASAGAA AVASKEGGRK KKPRRGARGS 120 PASPLDYSGS GASTSGGEDG AFFSQPAAPA APAAAAAAAA AAPSSKVGGL AGRRSILPVP 180 PPRPAGQWAR KKMRLPEIQQ LVRSLSVEND ALREEMKALQ RACTALSKEN GKLETRLDHS 240 SKRNGMISTE NKWKPQHGHE RVATEQDAQN GFVLPDLNLP ADD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	81	KRSRSR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.25039	0.0	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG255400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811831.1	1e-132	collagen alpha-1(I) chain-like
TrEMBL	A0A3L6PC00	1e-132	A0A3L6PC00_PANMI; Uncharacterized protein
STRING	Pavir.Da00230.1.p	1e-84	(Panicum virgatum)
STRING	GRMZM2G050912_P01	4e-84	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3790	29	51

Link Out ? help Back to Top
Phytozome	Pavir.4NG255400.1.p