PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG233000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 209aa MW: 22515.9 Da PI: 8.9248 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.9 | 6.5e-12 | 22 | 98 | 13 | 87 |
TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 ++ l++p +fa++ g++ + + l ++ g++W+ +l+ +++g+ l++GW +F+ a+g+++g +vvF+l++r Pavir.4NG233000.1.p 22 LHELRVPGEFAARLgGEDGAAAAVVLLVSPLGKVWREELRRAGGGGGpWQLGGGWAGFAAAHGIEAGWSVVFRLERR 98 46799******999633334555677778**********65444444899***********************9875 PP | |||||||
2 | B3 | 41.8 | 2e-13 | 118 | 199 | 4 | 88 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 t++d +++ + + k+ +++ g+ ++++t+++ + rsW v +++ ++ +y+ ++GWk+F+ + +LkegD ++F++++++ Pavir.4NG233000.1.p 118 RITRHDITSL--FAVKKSICSSVGLLGTCEITMKMSMGNTRSWPVLFKMANNF-GYITGQGWKRFCCESKLKEGDHCTFSVIETT 199 4444444444..6888999999999989999999999999*******655554.59999*********************77643 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.002 | 12 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-12 | 22 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-12 | 22 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-9 | 23 | 98 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.939 | 25 | 109 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-16 | 109 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-17 | 109 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.37E-9 | 114 | 193 | No hit | No description |
Pfam | PF02362 | 1.1E-10 | 115 | 198 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.2E-5 | 115 | 208 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.405 | 145 | 208 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MAPVVHRARP KYAAALPSPA CLHELRVPGE FAARLGGEDG AAAAVVLLVS PLGKVWREEL 60 RRAGGGGGPW QLGGGWAGFA AAHGIEAGWS VVFRLERRGP VSVEDVECHD NNTSFTKRIT 120 RHDITSLFAV KKSICSSVGL LGTCEITMKM SMGNTRSWPV LFKMANNFGY ITGQGWKRFC 180 CESKLKEGDH CTFSVIETTV WHVTVVSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG233000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q67VL7 | 4e-25 | Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500 | ||||
STRING | Si008427m | 3e-39 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG233000.1.p |