PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG231400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YB | ||||||||
Protein Properties | Length: 250aa MW: 26821.2 Da PI: 9.805 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 148.9 | 1.1e-46 | 42 | 136 | 2 | 96 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 r qdr++P+anvsrim+++lP +akis+ ake++q+cvsefisfvt+ea+++c+ e+rkt++++d++wa+ lGf+dy+ pl+++l++ r Pavir.4NG231400.1.p 42 RGQDRLMPVANVSRIMRHALPPHAKISDGAKEMIQDCVSEFISFVTGEANERCHTEHRKTVTAEDIVWAMNRLGFDDYIRPLNTFLQRMR 131 679*************************************************************************************** PP NF-YB 92 elege 96 e+eg Pavir.4NG231400.1.p 132 EIEGG 136 **985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.8E-42 | 40 | 138 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.26E-34 | 44 | 139 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.8E-23 | 48 | 111 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 6.9E-14 | 75 | 93 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 78 | 94 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 6.9E-14 | 94 | 112 | No hit | No description |
PRINTS | PR00615 | 6.9E-14 | 113 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSTDPQGPKP WAPCAMAPER AAVAKEAMST EPLVPGTEPV IRGQDRLMPV ANVSRIMRHA 60 LPPHAKISDG AKEMIQDCVS EFISFVTGEA NERCHTEHRK TVTAEDIVWA MNRLGFDDYI 120 RPLNTFLQRM REIEGGDGAG GSGSGRGSRR GSSLVALHGA QTMRPAYPDA PQGYAVRPVI 180 PRPVPVPASN AVASRFGSRY QLPGGQRSMA PYYGGAAFRA GGNRGGFYGD EASSSNEAPT 240 ARRARSRHY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 8e-46 | 36 | 132 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed primarily during seed development. {ECO:0000269|PubMed:12509518}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and developing siliques. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG231400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060974 | 4e-94 | BT060974.1 Zea mays full-length cDNA clone ZM_BFb0079C17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813135.1 | 1e-114 | nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | Q84W66 | 2e-46 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A2S3HJP8 | 1e-125 | A0A2S3HJP8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db01322.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 1e-46 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG231400.1.p |