PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG179800.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 386aa    MW: 40913.5 Da    PI: 10.0807
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG179800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.13.8e-1380122544
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNka 44 
                          k  rr+++NReAAr+sR+RKka+i++Le    + + Le+e+++
  Pavir.4NG179800.3.p  80 KTLRRLAQNREAARKSRLRKKAYIQQLESgriRLAHLEQEMQM 122
                          7789***********************9544489999999864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-975121No hitNo description
SMARTSM003388.3E-576129IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.57778108IPR004827Basic-leucine zipper domain
PfamPF001701.9E-1080123IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-880113No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
PfamPF141442.5E-25159230IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MHIEPSPKGS MSSSAAAAQV AGPSKTSQAA PSKAGGGPLS AGKSSKAAIK REGSAGGKHG  60
GAGAGPSSSD QEGPRTPDPK TLRRLAQNRE AARKSRLRKK AYIQQLESGR IRLAHLEQEM  120
QMARTHQGAL WGTGTLSPDA ALFNLEYERW LGDHSKVVAR LRAAAEEHRP DGELRAYADE  180
AASHYGALMG LKARAAAADP LHLLSGLWKG AAERCFLWIG GFRPSELIKV AVRHVEPLAE  240
QQAAGARDVE QAARRAEEAL DAELEALLRS LSEVVASDAQ PPPPGVFGGQ LYPHLPGADA  300
AGYMGMGHMH MALAMDKLAT LGTSLRQADE LRMQALQALR QILTARQAAR CFVAVDDYFC  360
RLRALSTLWT TTRAAPPQLA RGPAG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.276290.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG179800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550420.0BT055042.1 Zea mays full-length cDNA clone ZM_BFc0123E11 mRNA, complete cds.
GenBankKJ7276040.0KJ727604.1 Zea mays clone pUT5464 bZIP transcription factor (bZIP70) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965885.10.0transcription factor TGAL8 isoform X1
RefseqXP_004965886.10.0transcription factor TGAL8 isoform X2
SwissprotQ69T211e-142TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBLK3XWV90.0K3XWV9_SETIT; Uncharacterized protein
TrEMBLK3XX630.0K3XX63_SETIT; Uncharacterized protein
STRINGPavir.Db00756.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.15e-78bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]