PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG174200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 393aa    MW: 41548.3 Da    PI: 7.9365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG174200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-13116166255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Pavir.4NG174200.1.p 116 KTSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 166
                          799*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.894114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-17114189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-14114170No hitNo description
PfamPF000107.0E-11116166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-14116178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-11120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.696326392IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAEALCDQLF SDVDAGELMM HHASDADDLL GILEAWEDCV TGGGCTTPRG GDEVPQATDS  60
TARASPPKPA AGNVRRMGDR DDATVPAAPP KRRRCSPAVS SSEAAATSDD GAASNKTSHI  120
TVERNRRKQM NEHLAVLRSL MPCFYVKRGD QASIIGGVVD YIKELQQVLQ SLEAKKQRKA  180
YTDQVLSPRL PPACCSPRPP LSPRPPLPPL KFTPPISPRP SFPISPRTPP PGPGSPYKVR  240
RQPPLPLPLS PPGSAYASPA RTPTREPSPA SSSYLPSLDK IAAELCAYAA GTSNKPQRPA  300
LLPATGGGGV VLLPDVRVEF SGANLVVKTV SHRAPGQAVK VIAALEGRSL EILDAKISTV  360
DDTAVNSFTI KIGIECELSA EELVQEIQQA FS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.179400.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG174200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0933901e-104FP093390.1 Phyllostachys edulis cDNA clone: bphyem213c13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813040.10.0transcription factor SPEECHLESS-like
TrEMBLA0A2T7DY220.0A0A2T7DY22_9POAL; Uncharacterized protein
STRINGPavir.Db01402.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.12e-37bHLH family protein