PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG098300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 683aa    MW: 78648.8 Da    PI: 9.4162
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG098300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.87.5e-181493190
                 FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                         +fYn Y+ e GF +r  +s+k+++n    +++ vCs+eg ++ ++         +a+ rtgCka++++ +++d+ w ++k+  eHnH l+
  Pavir.4NG098300.1.p 14 DFYNLYSWEKGFGIRYGRSRKNRNNY-RLRQDIVCSCEGDNKGKN---------SASIRTGCKAMIQLLRRSDHGWFINKVIDEHNHMLS 93
                         6********************96665.999*********998754.........569******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-141493IPR004330FAR1 DNA binding domain
PfamPF105517.8E-15214299IPR018289MULE transposase domain
SMARTSM005750.0018499526IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MKEQISNSCE EAKDFYNLYS WEKGFGIRYG RSRKNRNNYR LRQDIVCSCE GDNKGKNSAS  60
IRTGCKAMIQ LLRRSDHGWF INKVIDEHNH MLSESCAEKK QWKSHSKIDA VTISFVKRPK  120
DNNISLGRTC NIVNNGNTGF EYVRRECVRS VCAKLSQVSL IDNLSKTMDL LQEMMSKDPG  180
MAVRFRTDTQ GKLTSMLWVT GKNRVDYSHF GDAITFNTTY RINLYSLPFG IFVGVNNHFQ  240
YSVVFGGVLL TTEKTEDFEW AFSNFVELMG NQCAVMAKAL RKVMISTRHH WCRWHVLKNA  300
KDKLGPIYSK RKTFKRAFNT LVIDVICIAE FETEWARLIT MYRLKNNKFL KRLYMHRKKW  360
AKPCFMGTFC AGMTSTQRSE SANHMLKRFI QRAAPMHLFV TKFNELQVDR GDQEGKEAHV  420
TKMVRICLKL CVGVPIEEHS KEVYTRAMYE KFYDELFESG KYAIHSICDG WKYVLIRNKD  480
KDLVNQKCIE VSYKSDDDLT CACGLFEHMG MLYRHALKVL VHLDKSEIPP KYVLKRWRKN  540
AIEKGQQNEM CTGSTVEEES FLKRVLISKT MEVVSGRASV LQSGIFETLN ALSACDAGTE  600
NCAVTECCAM GEENMRLQNI LTSCPDRTIK GGRPPSTGMK AWLASRKWKC ATEHSKNDSL  660
AQDWPDDENP PTWKKKRILD IV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG098300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310926.10.0protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1W0VV910.0A0A1W0VV91_SORBI; Uncharacterized protein
STRINGPavir.J15395.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-58FAR1-related sequence 5