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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.4NG094200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 279aa MW: 29669.2 Da PI: 7.76 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.4NG094200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 28.8 | 2.2e-09 | 192 | 236 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
n + ++RR+ri +++ L+el+P+ K++ +++L kA+ Y+k +q
Pavir.4NG094200.1.p 192 NLAAKNRRERITKRLRALQELVPNG-----SKVDTVTMLDKAITYVKFMQ 236
8889********************5.....5****************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MDMVCDPTPN LYYDEAFIDD VGHTGFEHEN LLHHPQQQHH PWELPMAGNP GRSSGTFALD 60 GGWANMAGVS LSSPSSSSVV TFDGHGGEYC AAWTDGLDQL INYDLAPPGH AAASAVASNS 120 FSIGGGRDVT AAAASQKRPR ASAPSQGAEQ EAAAAAAPPP PPKKQSGGHY RRAATKPRKA 180 LPTATAPKEP QNLAAKNRRE RITKRLRALQ ELVPNGSKVD TVTMLDKAIT YVKFMQLQLK 240 VLQTDAFWPA PGGEAPRMSQ VKEALDAILQ SPPFSSQR*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CT836278 | 2e-44 | CT836278.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K08, full insert sequence. |