PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG078200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 512aa MW: 54720.6 Da PI: 5.0773

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG078200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	60.9	4.1e-19	10	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atg 87 lp++f F P+de v +yL +++ g + +++ i e d +++ Pw+L + +++++e + ++ + + +g+r++r + g W+ +t Pavir.4NG078200.1.p 10 LPACFVFAPEDEVAVEYYLLPRLLGWRPQIDGLILEDDPLSAPPWELL-ERNGRKEEAFLLAEGQARCGKGTRQKRtCAGGGWWEgqKTC 98 6899************************999**********7.445677899999999********54556667632333 PP NAM 88 kdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + l+ ++e+ + kk L f+ g + +t Wvmhey++ Pavir.4NG078200.1.p 99 AEGKGLRVpggggGTEAAWRKKALNFHGGGGGEKGSTGWVMHEYAV 144 33333333687877778******99888888*******86 PP
2	NAM	75	1.8e-23	181	314	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk. 88 lppGf F P+d ++v +yL +++ g++l+l+ i + d +++ Pw+L + ++ +++ +fF+ + ++ +g+r++r + g+W+ + Pavir.4NG078200.1.p 181 LPPGFLFAPEDGDVVEQYLLRRILGQPLPLDGLILDDDPLSAPPWELLE-RNGCKDDAFFFALGQARSGKGSRQKRtCAGGGFWNGERTc 269 79**************************999**********73.34556799**************77789954332 PP NAM 89 .dkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 d e l+ + e+v+ kk L f +g ++ +t Wvmhey++ Pavir.4NG078200.1.p 270 vDGEKLRVavpggaGAEVVWRKKALSFQEGGEKG--STGWVMHEYAI 314 233332224568877788******9887766..8******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.63E-27	4	162	IPR003441	NAC domain
PROSITE profile	PS51005	25.286	10	163	IPR003441	NAC domain
Pfam	PF02365	3.6E-11	12	143	IPR003441	NAC domain
SuperFamily	SSF101941	1.2E-30	174	333	IPR003441	NAC domain
PROSITE profile	PS51005	28.743	181	333	IPR003441	NAC domain
Pfam	PF02365	8.0E-15	182	313	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MEAALRMGEL PACFVFAPED EVAVEYYLLP RLLGWRPQID GLILEDDPLS APPWELLERN 60 GRKEEAFLLA EGQARCGKGT RQKRTCAGGG WWEGQKTCAE GKGLRVPGGG GGTEAAWRKK 120 ALNFHGGGGG EKGSTGWVMH EYAVTAPEDL ARSPLRLYHI RRSSYGRKQS GAMEVPRALG 180 LPPGFLFAPE DGDVVEQYLL RRILGQPLPL DGLILDDDPL SAPPWELLER NGCKDDAFFF 240 ALGQARSGKG SRQKRTCAGG GFWNGERTCV DGEKLRVAVP GGAGAEVVWR KKALSFQEGG 300 EKGSTGWVMH EYAITAPDHL AASQMRLYRI RFSGHGKKRK RGEADSLADE AAQAAARRRV 360 ADDPLLDIST SQPSCSSSTV MVDHAYGNCP TDAGQLAAPV SISANQDLNP GGITVDTSLD 420 LSFLDNFDLD EFMRSLGDLP STDPCVLSAV TEMGAYLDAD AVGSSFFDQT GSPCNGVGAG 480 QVAMASSTLH RGCMEPADSF IAGLNQSYAA C*

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MEAALRMGEL PACFVFAPED EVAVEYYLLP RLLGWRPQID GLILEDDPLS APPWELLERN  60
GRKEEAFLLA EGQARCGKGT RQKRTCAGGG WWEGQKTCAE GKGLRVPGGG GGTEAAWRKK  120
ALNFHGGGGG EKGSTGWVMH EYAVTAPEDL ARSPLRLYHI RRSSYGRKQS GAMEVPRALG  180
LPPGFLFAPE DGDVVEQYLL RRILGQPLPL DGLILDDDPL SAPPWELLER NGCKDDAFFF  240
ALGQARSGKG SRQKRTCAGG GFWNGERTCV DGEKLRVAVP GGAGAEVVWR KKALSFQEGG  300
EKGSTGWVMH EYAITAPDHL AASQMRLYRI RFSGHGKKRK RGEADSLADE AAQAAARRRV  360
ADDPLLDIST SQPSCSSSTV MVDHAYGNCP TDAGQLAAPV SISANQDLNP GGITVDTSLD  420
LSFLDNFDLD EFMRSLGDLP STDPCVLSAV TEMGAYLDAD AVGSSFFDQT GSPCNGVGAG  480
QVAMASSTLH RGCMEPADSF IAGLNQSYAA C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-12	179	314	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	335	341	GKKRKRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG078200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813463.1	0.0	uncharacterized protein LOC112890817
TrEMBL	A0A2T7E0R6	0.0	A0A2T7E0R6_9POAL; Uncharacterized protein
STRING	Pavir.Bb00848.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP802	22	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.2	2e-09	NAC domain containing protein 41

Link Out ? help Back to Top
Phytozome	Pavir.4NG078200.1.p