PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG062800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 433aa MW: 47520.7 Da PI: 7.0245 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.1 | 8.9e-33 | 53 | 212 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp+G++F+Ptd+el+ e+L++kv+ + ++++ + i+ +i++++P++Lp ++++ + +fF++ +k+y+tg+rk+r+ Pavir.4NG062800.1.p 53 LPAGVKFDPTDQELI-EHLQAKVRPGStaapshplIDEFIHtIEGEdGICYTHPEKLP-GLTKDGLSRHFFHRPSKAYTTGTRKRRKiqp 140 799************.99*****9988777776653333334777656**********.455566799******************88** PP NAM 78 ....................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v++ g++ g+kk+Lv+y g+++++ekt+Wvmh+y+l Pavir.4NG062800.1.p 141 paadassssapaaqqqqqqqRSETRWHKTGKTRPVVV-AGRQRGCKKILVLYtnFGKHRRPEKTNWVMHQYHL 212 **************99998755789************.9999**********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-36 | 47 | 231 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.661 | 53 | 231 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-15 | 54 | 212 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MDGAAAAGAG SGGSGGHRLI GLRIEEYGKY ISDSTCCPQC GHKIDRKLDW VGLPAGVKFD 60 PTDQELIEHL QAKVRPGSTA APSHPLIDEF IHTIEGEDGI CYTHPEKLPG LTKDGLSRHF 120 FHRPSKAYTT GTRKRRKIQP PAADASSSSA PAAQQQQQQQ RSETRWHKTG KTRPVVVAGR 180 QRGCKKILVL YTNFGKHRRP EKTNWVMHQY HLGENEEERE GELVVSKIFY QTQPRQCGAA 240 AEPAAPASSD TVDGAADPAA DAVVAPPDVS DGGVFHGATG IDEFNFAQFR SSFEEVDVGT 300 SVQVPASRAD EEVHTGHLHL HQEHNLHQHR YPNQEQQRMA AAAAAFQIST PAEPITTMIS 360 SSPMVHHGSV ILQHQEPYDH SASYRHHQQV EDEQPHQSRN FDGRSTSGLE EVIMGCTSRR 420 SRRGVSIVQN LY* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG062800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969775 | 0.0 | EU969775.1 Zea mays clone 335447 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812519.1 | 0.0 | NAC domain-containing protein 75-like | ||||
Swissprot | Q9M0F8 | 1e-106 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A2T7DXI4 | 0.0 | A0A2T7DXI4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db01277.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 9e-97 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG062800.1.p |
Publications ? help Back to Top | |||
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