PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG270300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 453aa MW: 49418.5 Da PI: 6.9094 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106 | 4.8e-33 | 53 | 210 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp+G++F+Ptd+el+ e+L++kv+ + ++++ +i+ +i++++P++Lp ++++ + +fF++ +k+y+tg+rk+r+ Pavir.4KG270300.1.p 53 LPAGVKFDPTDQELI-EHLQAKVRPGStaapshplIDEFIpTIEGEdGICYTHPEKLP-GLTKDGLSRHFFHRPSKAYTTGTRKRRKiqp 140 799************.99*****9998676665543333333776646**********.455566799******************88** PP NAM 78 ..................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v++ g++ g+kk+Lv+y g+++++ekt+Wvmh+y+l Pavir.4KG270300.1.p 141 paadasssssapaaqqqqRSETRWHKTGKTRPVVV-AGRQRGCKKILVLYtnFGKHRRPEKTNWVMHQYHL 210 *************9998755789************.9999**********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-36 | 47 | 229 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.949 | 53 | 229 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-15 | 54 | 210 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MDGAAAAGAG SGGGGGHRLI GLRIEEYGKY MSDSTCCPQC GHKIDRKLDW VGLPAGVKFD 60 PTDQELIEHL QAKVRPGSTA APSHPLIDEF IPTIEGEDGI CYTHPEKLPG LTKDGLSRHF 120 FHRPSKAYTT GTRKRRKIQP PAADASSSSS APAAQQQQRS ETRWHKTGKT RPVVVAGRQR 180 GCKKILVLYT NFGKHRRPEK TNWVMHQYHL GENEEEREGE LVVSKIFFQT QPRQCGGAAE 240 PAAPASSDTV DGAAADPAAE AVVAPPDAGD GGVFHGATGI DEFNFAQFRS SFEEVDVGTS 300 VQVPARADEE VHTGHLHLHH QEHNVHQHRY PNQEQQRMAA AAAAFQISAP AEPITTMISS 360 SPMVHHGSVI LQHQKPYDHS ASYRHHQQVE DEQPHQSRNF DGRSTSGLEE VIMGCTSRRS 420 RRGEASGSGG NKESSDWQYP SFWPSDSQDH HG* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG270300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812519.1 | 0.0 | NAC domain-containing protein 75-like | ||||
Swissprot | Q9M0F8 | 1e-107 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A2T7DXI4 | 0.0 | A0A2T7DXI4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da00789.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 5e-97 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG270300.1.p |
Publications ? help Back to Top | |||
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