 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.4KG255200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
NAC |
| Protein Properties |
Length: 344aa MW: 38736.9 Da PI: 6.7983 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.4KG255200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 167.3 | 5.3e-52 | 10 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87
+ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+ ++ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg
Pavir.4KG255200.1.p 10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATG 98
69****************************.9***************943444442456******************************* PP
NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+dk+++ + + +gl+ktLvfy grap+g+ktdW+mheyrl
Pavir.4KG255200.1.p 99 RDKAIFLGNARRIGLRKTLVFYIGRAPHGKKTDWIMHEYRL 139
*******999*****************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MHPSGGPLSV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKDRCR 60
IGTGPQNDWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNARR IGLRKTLVFY 120
IGRAPHGKKT DWIMHEYRLD EENVEIQEDG WVVCRVFKKK NYQRGVNPAE MAALDDDELQ 180
PFPVPVPGAL PTDHKHNPHL MQYDQFPSFD PTMQLPQLMS ADQPVQTLLP SQHGVPIAMS 240
SLDVECSQNL MKLTSNGSDG MPHSAGGGVD RFTGTTDWSI LDKLLASHQN LDQLFQGRVS 300
TASAAQMAPY HEQLMELGGS SSLQRLPLQY LGGEAADLLR FPK*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 6e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 6e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 6e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 6e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 6e-51 | 8 | 161 | 15 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 6e-51 | 8 | 161 | 15 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ833965 | 0.0 | AJ833965.1 Zea mays partial mRNA for hypothetical protein (nac6 gene). |
