PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG246500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 530aa MW: 56344.2 Da PI: 6.8384 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.8 | 1.8e-31 | 119 | 172 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ Pavir.4KG246500.1.p 119 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 172 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.601 | 115 | 175 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-29 | 115 | 173 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.2E-14 | 118 | 173 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-22 | 119 | 174 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.2E-9 | 120 | 171 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MGEVKEKVVM EDGEKRSLEK SVPPAAVLDL NEGFSSEGSD GGEIGEDADG DNEEEEGIDD 60 EGGSTSEVAG AGRSSSNSSS TNHNSGSNSK DHDMNSSSKG EGGGERAPTV RQYNRSKLPR 120 LRWTPDLHMA FVHAVERLGG QERATPKLVL QMMNVRGLSI AHVKSHLQMY RSKKLDHESE 180 HERAAMSSVF SPMDFHMRRG DHPFHDMFFQ RAARTAISSR LLHNGGFFGS GSAVSPEASR 240 RLYGLLQSRQ PTMQTIDFKN YSSLRNQEWT FSQHAAAAVA RAGTINDHGQ AKGLIHDMIF 300 RKEGKPTSHL FDVRDAVASD RTSAAAAAAA DHGRRVGSSD WIGSSSGPLS RTMSAAASTG 360 FVFGSLHPLS SGRVSTGSNG YHPNGDAHTT SPDHVVTKKA LGSRLEEHLE PKNTAGTAAK 420 RTKASMEDNG GTPDLQLSLS PNAGGDSDKQ LAKNRKILNI ALSEQEEVDR DKMLPLSLSL 480 SLRGGDSGGE GSGGDAGRLL EAAIGSSSSK KAALGLSTLD LTMSIKALE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-18 | 120 | 172 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-18 | 120 | 172 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-18 | 120 | 172 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-18 | 120 | 172 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-18 | 120 | 172 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-18 | 120 | 172 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-18 | 120 | 172 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-18 | 120 | 172 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG246500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243223 | 1e-169 | AC243223.1 Panicum virgatum clone PV_ABa006-H05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812252.1 | 0.0 | uncharacterized protein LOC112889712 | ||||
TrEMBL | A0A2T7DXS0 | 0.0 | A0A2T7DXS0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da00896.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-34 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG246500.1.p |