PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.4KG219500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 193aa MW: 20756.8 Da PI: 9.1767 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00071 | 37 | 59 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k s++ ++ +H ++H Pavir.4KG219500.1.p 37 FVCLVCTKESSSQQHMAVHCKKH 59 89********************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
MGDQTWEAYF TDTPPPEPSL TKIITDLRKR VLVSPVFVCL VCTKESSSQQ HMAVHCKKHV 60 QAGMAKGTVK HIKYYPDHTT CYFFGINPQP TPRDSGSANR VRQVPMPSYK TVLSYAGSAF 120 VSHLASMLPE NPSGVSPVVT PTGDMSTIDL TLRLGSTPGT IAGALEGMTL PLHGSSRSAN 180 NIHFGDDPKG KK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.4KG219500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813180.1 | 1e-121 | uncharacterized protein LOC112890514 | ||||
TrEMBL | A0A3L6PAI6 | 1e-111 | A0A3L6PAI6_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Db01013.1.p | 1e-119 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12125 | 2 | 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.4KG219500.1.p |