PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG208800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 361aa    MW: 41565.3 Da    PI: 4.8767
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG208800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.34.9e-131142112390
                 FAR1  23 krngeitkrtfvCskegkreeekkk...............................tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                            ++e  k +fvC++eg+ ++ k+                                  ++r++++  +t+Cka+++vk+  ++kw+v+ +
  Pavir.4KG208800.1.p 114 GVTRELNKVQFVCNREGHGRKPKEYqaaaesddsnfdddcepndgndnaekkkkldGGTKRKREKMLHTDCKARMVVKLI-TDKWHVIFF 202
                          55778899**********999888899*********************9999999877788889999*************.9******** PP

                 FAR1  82 eleHnHela 90 
                            +HnH+l+
  Pavir.4KG208800.1.p 203 APDHNHDLV 211
                          *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-11114211IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDLNEFPPGF DYDFLDESIA NPSYCTQAPL CDASLRGSEH NNASNDLYNQ NNSDNQNANT  60
CSLNNPEDDA APDQLVLDVT EEVEEDIWLM PPVPYEGQTF SNKQEARDYT RLSGVTRELN  120
KVQFVCNREG HGRKPKEYQA AAESDDSNFD DDCEPNDGND NAEKKKKLDG GTKRKREKML  180
HTDCKARMVV KLITDKWHVI FFAPDHNHDL VQKPSLKKFL RSHKGIPKPE KDFIALLHGC  240
NLSSGRIMQL MNEFYGSAQL VPYEGKDVSN FRSKIRRIEK YKDMQETLDY FKELEQQDAE  300
FFYKIKLDTA HKVECLFWVD GAARHAYIES YSDLVSFDAT YMTNMYDMPF APFIGINRHG  360
Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG208800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311908.11e-120protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2T7D5A31e-133A0A2T7D5A3_9POAL; Uncharacterized protein
STRINGPavir.J35153.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7287518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-28FAR1-related sequence 5