PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG167200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 541aa    MW: 59630.8 Da    PI: 5.0975
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG167200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.93.3e-26211562128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknratk....sgyWka 85 
                          ppG++F Pt+ elv+ yL+ k+eg++ +l +v++ev +++++P +L +++k+ +e++wyfF+ r+ ++++ ++++nr+++    +++Wka
  Pavir.4KG167200.1.p  21 PPGYHFVPTEAELVDVYLRGKIEGREPPL-NVVNEVAVLEWQPGSLVEAYKGyGENKWYFFTAREPSSSNkEEEPNRKVRvpgvKATWKA 109
                          9*************************999.99**************8544443888********99888636678887666667899*** PP

                  NAM  86 tgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          tg+  ++ ++      ++ +vg+k++L++ + +a++    +W mhey l
  Pavir.4KG167200.1.p 110 TGSLVPISAEggarqrEKVVVGTKRVLIYQSSDAEE--DGKWSMHEYIL 156
                          ********997776655556*********9777766..89*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-2714173IPR003441NAC domain
PROSITE profilePS5100531.29920173IPR003441NAC domain
PfamPF023655.4E-1721155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MGGTVTARPQ PHELVRQLQF PPGYHFVPTE AELVDVYLRG KIEGREPPLN VVNEVAVLEW  60
QPGSLVEAYK GYGENKWYFF TAREPSSSNK EEEPNRKVRV PGVKATWKAT GSLVPISAEG  120
GARQREKVVV GTKRVLIYQS SDAEEDGKWS MHEYILKGHA KIGQYALCSI QRKQHSDTVD  180
DNAGEGSSRK RTRARNVDPE KTKKKRTTNK AAATKRTARK NKTSSRAKEG QHQPEEVAPV  240
SPVKPPCTPP QNLQALPQTL QQEQKALAVH GVPVLTAPPL QGYPPHPAGG MLGDYAPMHE  300
EDGSFQCDDD ISQYLEIQKL LRSCNREEQL PCYTSNEINA DSHAQYQLYQ QYQDDCEFLA  360
VEDQHMYTAA QYQCQDSDLF PSDATQSSSI WNHDGQHQIY QQEVGGAFGT PDQHTIAQYY  420
DQLPYELMGS GYLPEQVGYC SSSDQFIGSV QGDAAASGSD GDMGLAAAVD EFDAMSMLRD  480
DDPEDLGAQD GSNNPEALLS QYPGSRGQQQ HSAHGHVCDG PPSRSISDFW TKTLGDAVRG  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-181517612168NO APICAL MERISTEM PROTEIN
1ut4_B7e-181517612168NO APICAL MERISTEM PROTEIN
1ut7_A7e-181517612168NO APICAL MERISTEM PROTEIN
1ut7_B7e-181517612168NO APICAL MERISTEM PROTEIN
4dul_A7e-181517612168NAC domain-containing protein 19
4dul_B7e-181517612168NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188205RKRTRARNVDPEKTKKKR
2189203KRTRARNVDPEKTKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG167200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7E9V80.0A0A2T7E9V8_9POAL; Uncharacterized protein
STRINGPavir.J26931.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.11e-16NAC domain containing protein 19