PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG064200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 405aa    MW: 45024.6 Da    PI: 6.2614
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG064200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.7e-07153176123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y+C  Cg++F+++ +L+rH r  H
  Pavir.4KG064200.1.p 153 YSCAVCGRRFPTRPDLTRHFRQlH 176
                          99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.64E-5151179No hitNo description
Gene3DG3DSA:3.30.160.601.1E-4152179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.9E-4153176IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.256153181IPR007087Zinc finger, C2H2
PROSITE patternPS000280155176IPR007087Zinc finger, C2H2
CDDcd061672.55E-9171303No hitNo description
Gene3DG3DSA:3.40.50.10102.9E-5188292IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MPLALPFLHL PPNPTPFYPF RIHRTQQSQP DLSLRTRRPS AAAAAAAEAG NPSASVDVDV  60
EMVRGRDGVW TARSPTVVVL WDLDNKPPRG PPFPAATSLI AAASLLGRVV SISAFANRHA  120
FTHLPAWVAA ERRDRRALDR AERAGLAAPS VPYSCAVCGR RFPTRPDLTR HFRQLHERER  180
NKKLSRLRSL KGKKRQKFRE RFITGNTKYQ DAARELLTPK VGYGLASELR RAGVHVRTVP  240
DKPQAADHAL KRQVKHSVAC GVDWMVLVSD DSDFTDTVRN ARAADLRTVV VGDGCRALGK  300
VADIWLPWDR VENGEVDDEM LRSCTLPEYG EDQEDDRGEE FRFDWDTSDL DDVIDDIVGR  360
TSLLGATTIS AFADEDVTDG IFGVELNGEI MFWSSDDEEE DGYL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.417770.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG064200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810356.10.0uncharacterized protein LOC112888367
TrEMBLA0A3L6P9W30.0A0A3L6P9W3_PANMI; Uncharacterized protein
STRINGPavir.Da02143.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-95C2H2-like zinc finger protein