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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.3NG009200.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
GRAS |
| Protein Properties |
Length: 418aa MW: 45304.6 Da PI: 6.862 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3NG009200.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 267 | 6.2e-82 | 22 | 387 | 5 | 374 |
GRAS 5 LlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalklfsevsPil 91
L ecA d e+a ++L++ la+ ++ p+ Rla ++ La+rl + +v+ +++al ps+ + aa++ f+e+sP++
Pavir.3NG009200.1.p 22 LCECAA-----DVEAAARCLSQATGLAAAARdGPLPRLAVPVADCLARRLIHpMVPAVADALiDPSDH--LDRRCLRAARRSFFELSPFP 104
555555.....6778999****99996555538*****************998999999988444433..345556678999******** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
k + + N+ Ilea+e+e+ vH+iDf + q+ QW+ Ll+ + sRpeg+p+lR+T v++ + e l ++ e La+ A++l+vpf+ +
Pavir.3NG009200.1.p 105 KAAVAVGNRVILEAMENEKNVHVIDFArpAAQPCQWVRLLRDFHSRPEGAPHLRLTIVHD----DGEFLAKVSESLADEADKLDVPFQAH 190
**************************75589*****************************....9************************* PP
GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
va ++e+l++++L+ g + a l + l + +++ + +L++ + sPk+vv++eqea hn++sF +r++eal+yy+a +d
Pavir.3NG009200.1.p 191 C-VAGQIETLDPNDLHGVLGLNPATPLGFVSPPLTTPPFQMPAALVGFLSAAQAASPKIVVLAEQEAGHNGASFRKRVAEALSYYAAAYD 279
*.799**********98887777777777777777779999999999******************************************* PP
GRAS 270 sleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
sl+a +++ er+ vEr++lg+e+++v+ ega+rrerh +l++W +r+e aGF+ vpls+ a q lr++++ g + e++g
Pavir.3NG009200.1.p 280 SLDAAAAAYRrpaAERAEVERAVLGEEVRDVLLREGARRRERHDRLHQWARRMEVAGFRGVPLSYAALRQGVDTLRRCGVGGCESREHEG 369
**777554434559**************************************************************************** PP
GRAS 357 slvlgWkdrpLvsvSaWr 374
+l+l+W++ pL+svSaWr
Pavir.3NG009200.1.p 370 CLLLCWRSWPLYSVSAWR 387
*****************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MHPPPPTENG PASRLARLGR ALCECAADVE AAARCLSQAT GLAAAARDGP LPRLAVPVAD 60
CLARRLIHPM VPAVADALID PSDHLDRRCL RAARRSFFEL SPFPKAAVAV GNRVILEAME 120
NEKNVHVIDF ARPAAQPCQW VRLLRDFHSR PEGAPHLRLT IVHDDGEFLA KVSESLADEA 180
DKLDVPFQAH CVAGQIETLD PNDLHGVLGL NPATPLGFVS PPLTTPPFQM PAALVGFLSA 240
AQAASPKIVV LAEQEAGHNG ASFRKRVAEA LSYYAAAYDS LDAAAAAYRR PAAERAEVER 300
AVLGEEVRDV LLREGARRRE RHDRLHQWAR RMEVAGFRGV PLSYAALRQG VDTLRRCGVG 360
GCESREHEGC LLLCWRSWPL YSVSAWRPDR GSAYGVGSGY LSPSAPPDHC FDEELMC*
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