PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG007000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 237aa MW: 23964.3 Da PI: 10.5638

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG007000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.7e-05	115	137	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgks++++ L H +H Pavir.3NG007000.1.p 115 YTCKFCGKSYTSHQALGGHVAKH 137 9***************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.6E-4	112	138	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.16E-6	112	139	No hit	No description
SMART	SM00355	0.0084	115	137	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.91	115	142	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	117	137	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MGSLLLSTGG REILSRAGAP PAGAVDGASS VLIDRASERA AGGGGAITSS TASGARPCLF 60 LFFFLAGTMG GPVYSSVHAS AAVHHPPPPY ADQAPQLPRP LVVPRRAADR AQREYTCKFC 120 GKSYTSHQAL GGHVAKHKSM QREAAAAAAA AAAGMAAMPI QDGDALRRAR GRGGRQRVAP 180 AQSQELVQAK AAAAVVGIVV VGVGGLLVII VIGQAAAGRE RRGGVHGRSQ WDCDCD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG007000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7612	11	36

Link Out ? help Back to Top
Phytozome	Pavir.3NG007000.1.p