PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG551100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 374aa    MW: 39993.3 Da    PI: 10.1551
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG551100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.92.2e-30208264158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          ++p+YVNaKQy++Il+RR +Rak+e+e++l  k+rkpylheSRh hAlrR+RgsgGrF
  Pavir.3KG551100.1.p 208 EAPIYVNAKQYEGILRRRRARAKAERENRL-VKARKPYLHESRHLHALRRARGSGGRF 264
                          57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.1E-35206267IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.744207267IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.2E-23210232IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.4E-27210264IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860212232IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.2E-23241264IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MIAVGGSGRC LTTSIRRTSD GARPTKLSPA SDFLGRRRRS SAGTMMSFRS HEGFGQVPAG  60
ATSNGAAVPW WAPAPQLLLY GDALGQGKVP PEQAPCREAR FQVVPGAQAP LGPPVQPPAK  120
AAAERGLPEV LKFSVAQGKG EKGSEHSASV ALPSPFAIYN GRFELGLGQS TVSVNSPYVD  180
QHCGLLSSYP VGAMPGGCMR IPLNMPTEAP IYVNAKQYEG ILRRRRARAK AERENRLVKA  240
RKPYLHESRH LHALRRARGS GGRFLNTKKE SNTKDAGGDG KAMFSNPLMR QVASPSSEIQ  300
QSDLGNPSSV SSLSGSEVSS IYDHEDVDHF HSFDHIRTPF FTPLPSIMGS EHGVGNPFKW  360
PIASEGCCDL LRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-17207272166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.183410.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG551100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809770.10.0nuclear transcription factor Y subunit A-10-like
RefseqXP_025809771.10.0nuclear transcription factor Y subunit A-10-like
RefseqXP_025809772.10.0nuclear transcription factor Y subunit A-10-like
RefseqXP_025809773.10.0nuclear transcription factor Y subunit A-10-like
RefseqXP_025809774.10.0nuclear transcription factor Y subunit A-10-like
TrEMBLA0A3L6SZX70.0A0A3L6SZX7_PANMI; Nuclear transcription factor Y subunit A-10-like
STRINGPavir.J24924.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.31e-26nuclear factor Y, subunit A10