PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG529900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 25488.8 Da PI: 10.4888 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.2 | 5.3e-17 | 72 | 120 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ahn E+rRR++iN+++ +L++l+P + + K + a++L ++++Y+ksLq Pavir.3KG529900.1.p 72 EAHNLTEKRRRHKINERLKTLQQLVPGC----DDKSNQASTLDQTIQYLKSLQ 120 58*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-19 | 66 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.641 | 69 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-19 | 71 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-14 | 72 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.65E-16 | 72 | 124 | No hit | No description |
SMART | SM00353 | 1.1E-14 | 75 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAAWLRTIVR GEELAVNDDG GGRDVPAEKG SSDNASTSTT DSKEKHPAVT EGMQEMRQPS 60 AGGSSRRSHY GEAHNLTEKR RRHKINERLK TLQQLVPGCD DKSNQASTLD QTIQYLKSLQ 120 HHVQAMSIGP ARPAAAAVPV VPPQYAPPGA PPVMPAAPVV LAASAQTTMV PFGAMLQTMP 180 HYPAAVPVMM PAPAAPLSYS YPAAPPPRAA AVAPGGAGSS SASHRHGSSS RKGKGGRSLR 240 HKH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG529900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806979.1 | 7e-94 | putative transcription factor bHLH056 | ||||
TrEMBL | A0A2T7EIW9 | 3e-95 | A0A2T7EIW9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca02790.1.p | 1e-121 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6283 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.1 | 6e-19 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG529900.1.p |