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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.3KG491200.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB_related |
Protein Properties |
Length: 176aa MW: 19675.1 Da PI: 5.2854 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3KG491200.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 50.9 | 3.7e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
Pavir.3KG491200.2.p 2 SPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43
899***************.*********.************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 176 aa
Download sequence Send
to blast |
MSPHEERLIL ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KRNMSPSSSS 60 SSLTYQSCYP DTPSTIGVEG QELHGGSGCI TSILKGNPSD MDAYPMDQIW MEIEAPEVPS 120 GMGLDGGNDN ACSSLTAPLL PPTAWDYYPE ACWKMDEEIK MAPQFGYSEG VGPCF*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. {ECO:0000305}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT039131 | 1e-179 | BT039131.1 Zea mays full-length cDNA clone ZM_BFb0374B19 mRNA, complete cds. |
GenBank | BT068640 | 1e-179 | BT068640.1 Zea mays full-length cDNA clone ZM_BFb0353K20 mRNA, complete cds. |
GenBank | HQ858675 | 1e-179 | HQ858675.1 Zea mays clone UT1131 MYB transcription factor mRNA, partial cds. |