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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.3KG491200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 241aa MW: 27388.1 Da PI: 8.049 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3KG491200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 56.1 | 8.8e-18 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed++lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl
Pavir.3KG491200.1.p 10 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 57
79********************************************97 PP
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2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rgr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
Pavir.3KG491200.1.p 63 RGRMSPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108
89********************.*********.************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MVTVREETRK GPWTEQEDLQ LVCTVRLFGE RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG 60 LKRGRMSPHE ERLILELHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKRNMS 120 PSSSSSSLTY QSCYPDTPST IGVEGQELHG GSGCITSILK GNPSDMDAYP MDQIWMEIEA 180 PEVPSGMGLD GGNDNACSSL TAPLLPPTAW DYYPEACWKM DEEIKMAPQF GYSEGVGPCF 240 *
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. {ECO:0000305}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT039131 | 0.0 | BT039131.1 Zea mays full-length cDNA clone ZM_BFb0374B19 mRNA, complete cds. |
GenBank | HQ858675 | 0.0 | HQ858675.1 Zea mays clone UT1131 MYB transcription factor mRNA, partial cds. |