PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG462600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 395aa MW: 46449.7 Da PI: 6.978

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG462600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.7	1.9e-08	4	35	57	88
FAR1 57 etrtgCkaklkvkkekdgkwevtkleleHnHe 88 ++rt+C a++ v+k+ g+wev ++e eHnHe Pavir.3KG462600.1.p 4 VDRTHCPARMIVRKTPPGHWEVVNFEREHNHE 35 579****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-6	4	35	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.6E-31	159	253	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MYYVDRTHCP ARMIVRKTPP GHWEVVNFER EHNHERLRKF SLTKYLKSHR DIPAEEKEFI 60 KLLHGCSITT TRAYQIMAEL YGGIENCPYT EGGAKNLRVE YRAKYRGKDV KATLEYFEEL 120 NMEDSEFYYS YTLDEFDRVE NLFWVDGVAR RTYELYSDCL SFDTTYLTNA YNMPCAPFIG 180 IDRNGITIQL GCGFLRNEKT EGFVWLFTEF KKAMGGKDPA NIITDQDIAM KATVAEVFVS 240 SVHRNCRWHI MENARKTMGA FLDSKGDGKQ ELADDFKDCI DNSFTPAEFE QKWQAFLDKY 300 ELNNDERFQH LYDMRHCWIP AYFMHFFFPF LQTKARSEGF NAVLNRYVNP KNSILNFVQQ 360 YKKIQQRIFS KQDLQEAATA TKVPRYLTGH PMEH*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MYYVDRTHCP ARMIVRKTPP GHWEVVNFER EHNHERLRKF SLTKYLKSHR DIPAEEKEFI  60
KLLHGCSITT TRAYQIMAEL YGGIENCPYT EGGAKNLRVE YRAKYRGKDV KATLEYFEEL  120
NMEDSEFYYS YTLDEFDRVE NLFWVDGVAR RTYELYSDCL SFDTTYLTNA YNMPCAPFIG  180
IDRNGITIQL GCGFLRNEKT EGFVWLFTEF KKAMGGKDPA NIITDQDIAM KATVAEVFVS  240
SVHRNCRWHI MENARKTMGA FLDSKGDGKQ ELADDFKDCI DNSFTPAEFE QKWQAFLDKY  300
ELNNDERFQH LYDMRHCWIP AYFMHFFFPF LQTKARSEGF NAVLNRYVNP KNSILNFVQQ  360
YKKIQQRIFS KQDLQEAATA TKVPRYLTGH PMEH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG462600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024312803.1	1e-139	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3L6SLU8	0.0	A0A3L6SLU8_PANMI; Uncharacterized protein
STRING	Pavir.Ca02379.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-68	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.3KG462600.1.p