 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.3KG460200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 511aa MW: 54978.1 Da PI: 8.2641 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3KG460200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 47.2 | 5.1e-15 | 120 | 167 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+lv + + G g+W+ +ar g+ R++k+c++rw +yl
Pavir.3KG460200.1.p 120 KGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 167
678*******************************************97 PP
|
| 2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 173 | 216 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++++E+el+v +++ lG++ W+ Ia++++ gRt++++k++w++
Pavir.3KG460200.1.p 173 RGAFSPQEEELIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 216
89********************.*********.***********97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0050832 | Biological Process | defense response to fungus |
| GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 511 aa
Download sequence Send
to blast |
MSSPSSFSSS FHSSSHYSMY TTNTLTHTHI TIYIQHTLRP ISSLSSTPTH TACSEIIDRP 60
HAHSLALLLD RRSYAHRRRP HVRVRDHHQG RTCRTAMRKP EGPAAANSCN NAGAAAKLRK 120
GLWSPEEDEK LVAYMLRSGQ GSWSDVARNA GLQRCGKSCR LRWINYLRPD LKRGAFSPQE 180
EELIVSLHAI LGNRWSQIAA RLPGRTDNEI KNFWNSTIKK RIKNSSSASS PAAATDCASP 240
EPNNGKVAGF DISGAASCPD LAGLDRQVDG GHHHAMVTTG LWMVDSSSST SSSTSPMQQG 300
RPPSSAMVAA VTRSYGGLLP LPDQLRGGMA ADASPAGFFH GHAAPFKHQA VVASLHGGYY 360
GGSAPHHHGM MATMEGGGGC FMRGEGLFGV PPLLEAMSSQ DQDHHGQALM ASSGGGNNNN 420
PKNNSSSNTT EATATTTTTV SNNESNITDN TKENINTMSL VNSSSSNVAA VYWEGAHQQY 480
MSRNVMHGEW DLEELMKDVS SLPFLDFQVE *
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KT075095 | 0.0 | KT075095.1 Panicum virgatum secondary wall-associated MYB domain-containing protein (MYB46B) mRNA, complete cds. |
