PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG454600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 520aa    MW: 54743.5 Da    PI: 7.6721
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG454600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.12e-17132221186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +Wt+  +  L++a++++ e+l+rg+l++ +We+v++++     ++   +s +qCk+k++nl+kryk + ++  +   +++s++++f+++e
  Pavir.3KG454600.1.p 132 EWTDGAISSLLDAYTDRFEQLNRGNLRGRDWEDVAAAVtdgqGKTTGGKSIEQCKNKIDNLKKRYKVECQRLASSGTGAVSHWAWFKKME 221
                          5*************************************6654334446899***************999988888788999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-19130223No hitNo description
Gene3DG3DSA:3.40.1160.104.9E-70272512IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536332.49E-51277512IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.522277513IPR015963Uridylate kinase, bacteria
PfamPF006964.2E-17280492IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.35E-102280513No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MASCDDDFGL LGDDTHQPAA PPPQPATAAL QPAAAAAAAP PAQAFCFAGA TVAAGAGSFA  60
QAQEESNHHA ERGKAAHHAK RARERPDEFS SDGGEYCSYI NSGGSGGGGG GKKGRGGGGS  120
SGASDYRKDR EEWTDGAISS LLDAYTDRFE QLNRGNLRGR DWEDVAAAVT DGQGKTTGGK  180
SIEQCKNKID NLKKRYKVEC QRLASSGTGA VSHWAWFKKM EQIVGTSASP ASSKAPVVVE  240
DEKPRQQQQH ASKRCPLSSA GPLTVVGSSR ANSLSNPRWK RVLLKIGGTA LAGAAPQNVD  300
PKIIMLIARE VQVACHHGVE VAIVVGGRNI FCGDNWVAAT GTDRASTYPI GMMASVMNSV  360
LLQASLEKIG VETRVQTALM IQEVAEPYVR RRAIRHLEKG RVVIFGGIGA GIGNPLFTTD  420
TAAALRASEI NADVVLKGIV GDDEYGCPPR GNSNTPFEHI SFRELAARGF SRMDMTAVTC  480
CEENNIPVVI FNMLEPGNIS RAICGDQIGT LVDQSGRIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-612715121239Uridylate kinase
3ek5_B2e-612715121239Uridylate kinase
3ek5_C2e-612715121239Uridylate kinase
3ek5_D2e-612715121239Uridylate kinase
3ek5_E2e-612715121239Uridylate kinase
3ek5_F2e-612715121239Uridylate kinase
3ek6_A2e-612715121239Uridylate kinase
3ek6_B2e-612715121239Uridylate kinase
3ek6_C2e-612715121239Uridylate kinase
3ek6_D2e-612715121239Uridylate kinase
3ek6_E2e-612715121239Uridylate kinase
3ek6_F2e-612715121239Uridylate kinase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109117GGKKGRGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.84130.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG454600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0675670.0BT067567.1 Zea mays full-length cDNA clone ZM_BFc0089D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823789.10.0uncharacterized protein LOC112899509 isoform X1
TrEMBLA0A2S3I6B50.0A0A2S3I6B5_9POAL; Uncharacterized protein
STRINGPavir.Gb01778.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-155Trihelix family protein