PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG318100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 307aa    MW: 33262.9 Da    PI: 4.9614
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG318100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l++ + ++G g+W+++++  g+ R++k+c++rw +yl
  Pavir.3KG318100.1.p 16 KGLWSPEEDEKLYNHIIRHGVGCWSSVPKLAGLQRCGKSCRLRWINYL 63
                         678*******************************************97 PP
2Myb_DNA-binding51.42.5e-1669113147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+++++E++l++ +++ lG++ W+ Ia++++ gRt++++k++w++ 
  Pavir.3KG318100.1.p  69 RGSFSQQEEDLILALHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 113
                          899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-231166IPR009057Homeodomain-like
PROSITE profilePS5129417.6221163IPR017930Myb domain
SuperFamilySSF466894.49E-2913110IPR009057Homeodomain-like
SMARTSM007172.3E-121565IPR001005SANT/Myb domain
PfamPF002499.4E-151663IPR001005SANT/Myb domain
CDDcd001678.69E-121963No hitNo description
PROSITE profilePS5129425.94464118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2667118IPR009057Homeodomain-like
SMARTSM007172.2E-1668116IPR001005SANT/Myb domain
PfamPF002497.3E-1569113IPR001005SANT/Myb domain
CDDcd001675.61E-1271111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRLSCGGGV QPKLRKGLWS PEEDEKLYNH IIRHGVGCWS SVPKLAGLQR CGKSCRLRWI  60
NYLRPDLKRG SFSQQEEDLI LALHEILGNR WSQIASHLPG RTDNEIKNFW NSCLKKKLRQ  120
RGIDPSTHKP IAGAGAGAVD HDRKPAAGDS DEGLAQKQPA VFDPFPLADF GFDLGAAGVA  180
ALYCGPYDDG VGKASPDAGW FVADYSSVLD VSENLGYGES SSNSSNWTCA EMSSAVLDSE  240
VLHWASGGGA AKPEPYTELE QQQRSGGYGG GEQAVDDDDD ALEHKFSLPC GQEQSLAHFD  300
FNLEYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121183108B-MYB
1h8a_C1e-281011821128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119LKKKLRQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG318100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794200.0HF679420.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB14 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807707.10.0myb-related protein Hv33-like
SwissprotP200271e-119MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A3L6SV810.0A0A3L6SV81_PANMI; Myb-related protein Hv33-like
STRINGPavir.Ca01788.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-75myb domain protein 86