PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG317900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 267aa MW: 28511.5 Da PI: 7.6427 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23 | 1.4e-07 | 140 | 181 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+RR+ri ++ +eL +l+P K++ a +Le+A +++k Lq Pavir.3KG317900.1.p 140 ARQRRKRISEKTAELSRLIPGgH------KMNTAKMLEEAARHVKLLQ 181 69******************955......****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.788 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-8 | 137 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-10 | 137 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-8 | 138 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.86E-8 | 139 | 184 | No hit | No description |
Pfam | PF00010 | 5.5E-5 | 140 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MSFLQDVHPE VTDALLGFVY DPLDPANAAL DDLLSLPPHD DDDAFLRPIH GDGDGKVERH 60 CAKRQRTCGD GAWRGLARIG AGQQSNGGGN QQVPEPPNEL VLPLPLLPPP QLPEPPALVR 120 VADANKAAGN VSQPVQSTAA RQRRKRISEK TAELSRLIPG GHKMNTAKML EEAARHVKLL 180 QAQVGVLALM RTVGSTDENE KVPSMAQEQM HALLVRGSVQ ERLAAEGKCL VPRKLVDAVA 240 SDSSVKSNAL VSRDLGRFVA SLLAGR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG317900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661333.1 | 1e-130 | uncharacterized protein LOC101765829 | ||||
TrEMBL | A0A2T7CI40 | 1e-149 | A0A2T7CI40_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05526.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6201 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 1e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG317900.1.p |